| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 82 [0] | [0] 84 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 74 (1.090) | 50/92 | 0.0 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
CAGCCCCATACCAATCATAGATTTAGTAAATATATTTAATTTCATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGAA > NC_000913/3469809‑3469903 | acctgtttctttctgctcacgcgcggcgatatagaattcaaacatTATaa < 1:3361241‑M2/5‑1 (MQ=255) cctgtttctttctgctcacgcgcggcgatatagaattcaaacatTATAAt < 1:577467‑M2/6‑1 (MQ=255) cctgtttctttctgctcacgcgcggcgatatagaattcaaacatTATAAt > 1:5586247‑M2/45‑50 (MQ=255) tgtttctttctgctcacgcgcggcgatatagaattcaaacatTATAATcc > 1:4602446‑M2/43‑50 (MQ=255) tttctttctgctcacgcgcggcgatatagaattcaaacatTATAATcc < 1:505463‑M2/8‑1 (MQ=255) ttctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCtt > 1:2388597‑M2/40‑50 (MQ=255) tctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCtt < 1:263268‑M2/11‑1 (MQ=255) tctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtg > 1:5537461‑M2/39‑50 (MQ=255) ctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtgt > 1:2189631‑M2/38‑50 (MQ=255) ctttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtgt > 1:1823276‑M2/38‑50 (MQ=255) tttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtgt > 1:2723785‑M2/37‑49 (MQ=255) tttctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtgt > 1:1731634‑M2/37‑49 (MQ=255) tctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtgtg < 1:5364199‑M2/14‑1 (MQ=255) tctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtgtg < 1:2666608‑M2/14‑1 (MQ=255) tctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTtgt < 1:4749571‑M2/13‑1 (MQ=255) tctgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGAc > 1:1513356‑M2/35‑50 (MQ=255) tgctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACg > 1:112563‑M2/33‑49 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACg < 1:3221075‑M2/17‑1 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGt < 1:6162‑M2/18‑1 (MQ=255) ctcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTa > 1:1029358‑M2/31‑49 (MQ=255) tcacgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaa > 1:4857417‑M2/30‑49 (MQ=255) acgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaaaaa < 1:2495565‑M2/23‑1 (MQ=255) acgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaaaa < 1:5391657‑M2/22‑1 (MQ=255) acgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaaaa < 1:4906732‑M2/22‑1 (MQ=255) acgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaaaa < 1:987644‑M2/22‑1 (MQ=255) acgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTaaa < 1:3302579‑M2/21‑1 (MQ=255) cgcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAAc < 1:301814‑M2/24‑1 (MQ=255) gcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACt > 1:598508‑M2/26‑50 (MQ=255) gcgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACt < 1:3213512‑M2/25‑1 (MQ=255) cgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTg < 1:2306596‑M2/26‑1 (MQ=255) cgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTg > 1:878283‑M2/25‑50 (MQ=255) cgcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTg < 1:4271929‑M2/26‑1 (MQ=255) gcggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGc < 1:5094003‑M2/27‑1 (MQ=255) ggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaa < 1:3061381‑M2/29‑1 (MQ=255) ggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaa < 1:655718‑M2/29‑1 (MQ=255) ggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaa < 1:3375485‑M2/29‑1 (MQ=255) ggcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGca > 1:4971348‑M2/22‑49 (MQ=255) gcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaa < 1:351922‑M2/30‑1 (MQ=255) gcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaa > 1:3560579‑M2/21‑49 (MQ=255) gcgatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaa > 1:239762‑M2/21‑49 (MQ=255) gatatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaa > 1:4471086‑M2/19‑49 (MQ=255) atatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaac > 1:1815169‑M2/18‑49 (MQ=255) atatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaac > 1:5332066‑M2/18‑49 (MQ=255) atatagaattcaaacatTATAATCCCTTGTGACGAAAAAACTGcaaaac > 1:4543170‑M2/18‑49 (MQ=255) tatagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaaca > 1:1769792‑M2/17‑49 (MQ=255) atagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaa > 1:3203887‑M2/16‑49 (MQ=255) atagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaa > 1:2604104‑M2/16‑49 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaaa < 1:2193343‑M2/35‑1 (MQ=255) tagaattcaaacatTATAATCCCTTGTGACGTAAAAACTGcaaaacaa > 1:3699385‑M2/15‑48 (MQ=255) agaattcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAg > 1:2955150‑M2/14‑50 (MQ=255) agaattcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAg > 1:2762254‑M2/14‑50 (MQ=255) gaattcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGt > 1:1251581‑M2/13‑50 (MQ=255) gaattcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGt < 1:2258295‑M2/38‑1 (MQ=255) gaattcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGt < 1:1344253‑M2/38‑1 (MQ=255) gaattcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGt < 1:5412943‑M2/38‑1 (MQ=255) aattcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTc > 1:4620535‑M2/12‑50 (MQ=255) aattcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTc > 1:2053070‑M2/12‑50 (MQ=255) aattcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTc > 1:1737399‑M2/12‑50 (MQ=255) ttcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTcc > 1:469921‑M2/10‑49 (MQ=255) ttcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTcc > 1:973724‑M2/10‑49 (MQ=255) ttcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCt < 1:743104‑M2/41‑1 (MQ=255) ttcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCt < 1:3033748‑M2/41‑1 (MQ=255) tcaaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTa > 1:417730‑M2/9‑50 (MQ=255) caaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTa < 1:5264045‑M2/42‑1 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACg < 1:2730742‑M2/44‑1 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACg > 1:2543729‑M2/7‑50 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACg < 1:4671627‑M2/44‑1 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACg > 1:3239033‑M2/7‑50 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACg < 1:93270‑M2/44‑1 (MQ=255) aaacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACg > 1:2821288‑M2/7‑50 (MQ=255) aacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACg > 1:1536453‑M2/6‑49 (MQ=255) aacatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACg > 1:5163179‑M2/6‑49 (MQ=255) acatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACg > 1:578154‑M2/5‑48 (MQ=255) acatTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCa < 1:5074187‑M2/46‑1 (MQ=255) catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAg > 1:514780‑M2/4‑50 (MQ=255) atTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAgg < 1:5278008‑M2/48‑1 (MQ=255) atTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAg > 1:3529988‑M2/3‑49 (MQ=255) atTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAg > 1:4752230‑M2/3‑49 (MQ=255) tTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGa < 1:540978‑M2/49‑1 (MQ=255) tTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGa < 1:295336‑M2/49‑1 (MQ=255) tataATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGaa > 1:1004438/1‑50 (MQ=255) tataATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGaa > 1:645728/1‑50 (MQ=255) tataATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGaa > 1:525169/1‑50 (MQ=255) tataATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGaa > 1:2752307/1‑50 (MQ=255) | CAGCCCCATACCAATCATAGATTTAGTAAATATATTTAATTTCATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGAA > NC_000913/3469809‑3469903 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |