| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 82 [0] | [0] 84 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 74 (1.090) | 50/92 | 0.0 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
GGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCG > NC_000913/3453879‑3453976 | ggTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT > 1:2995435‑M1/1‑49 (MQ=255)ggTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT > 1:2623893‑M1/1‑49 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataa < 1:3361241‑M1/50‑6 (MQ=255) ccTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataat < 1:577467‑M1/50‑7 (MQ=255) ccTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataat > 1:5586247‑M1/1‑44 (MQ=255) tGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataatcc > 1:4602446‑M1/1‑42 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATtataatcc < 1:505463‑M1/48‑9 (MQ=255) ttctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatccctt > 1:2388597‑M1/1‑39 (MQ=255) tctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttg > 1:5537461‑M1/1‑38 (MQ=255) tctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatccctt < 1:263268‑M1/49‑12 (MQ=255) ctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt > 1:1823276‑M1/1‑37 (MQ=255) ctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt > 1:2189631‑M1/1‑37 (MQ=255) tttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt > 1:2723785‑M1/1‑36 (MQ=255) tttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt > 1:1731634‑M1/1‑36 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgac > 1:1513356‑M1/1‑34 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtg < 1:5364199‑M1/48‑15 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtg < 1:2666608‑M1/48‑15 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt < 1:4749571‑M1/47‑14 (MQ=255) tGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacg > 1:112563‑M1/1‑32 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgta > 1:1029358‑M1/1‑30 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgt < 1:6162‑M1/48‑19 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacg < 1:3221075‑M1/47‑18 (MQ=255) tCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaa > 1:4857417‑M1/1‑29 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaa < 1:2495565‑M1/50‑24 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaa < 1:4906732‑M1/49‑23 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaa < 1:987644‑M1/49‑23 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaa < 1:5391657‑M1/49‑23 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaa < 1:3302579‑M1/48‑22 (MQ=255) cgcgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaac < 1:301814‑M1/50‑25 (MQ=255) gcgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaact > 1:598508‑M1/1‑25 (MQ=255) gcgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaact < 1:3213512‑M1/50‑26 (MQ=255) cgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaactg > 1:878283‑M1/1‑24 (MQ=255) cgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaactg < 1:2306596‑M1/50‑27 (MQ=255) cgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaactg < 1:4271929‑M1/50‑27 (MQ=255) gcggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgc < 1:5094003‑M1/50‑28 (MQ=255) ggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaa < 1:655718‑M1/50‑30 (MQ=255) ggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaa < 1:3061381‑M1/50‑30 (MQ=255) ggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaa < 1:3375485‑M1/50‑30 (MQ=255) ggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgca > 1:4971348‑M1/1‑21 (MQ=255) gcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaa < 1:351922‑M1/50‑31 (MQ=255) gcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaa > 1:239762‑M1/1‑20 (MQ=255) gcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaa > 1:3560579‑M1/1‑20 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:4471086‑M1/1‑18 (MQ=255) atatAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaac > 1:1815169‑M1/1‑17 (MQ=255) atatAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaac > 1:5332066‑M1/1‑17 (MQ=255) atatAGAATTCAAACATtataatcccttgtgacgaaaaaactgcaaaac > 1:4543170‑M1/1‑17 (MQ=255) tataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaaca > 1:1769792‑M1/1‑16 (MQ=255) ataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 1:2604104‑M1/1‑15 (MQ=255) ataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 1:3203887‑M1/1‑15 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaa < 1:2193343‑M1/49‑36 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 1:3699385‑M1/1‑14 (MQ=255) aGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaag > 1:2955150‑M1/1‑13 (MQ=255) aGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaag > 1:2762254‑M1/1‑13 (MQ=255) gAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagt > 1:1251581‑M1/1‑12 (MQ=255) gAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagt < 1:1344253‑M1/50‑39 (MQ=255) gAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagt < 1:5412943‑M1/50‑39 (MQ=255) gAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagt < 1:2258295‑M1/50‑39 (MQ=255) aaTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtc > 1:1737399‑M1/1‑11 (MQ=255) aaTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtc > 1:4620535‑M1/1‑11 (MQ=255) aaTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtc > 1:2053070‑M1/1‑11 (MQ=255) ttCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcct < 1:743104‑M1/50‑42 (MQ=255) ttCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcct < 1:3033748‑M1/50‑42 (MQ=255) ttCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcc > 1:469921‑M1/1‑9 (MQ=255) ttCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcc > 1:973724‑M1/1‑9 (MQ=255) tCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta > 1:417730‑M1/1‑8 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta < 1:5264045‑M1/49‑43 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg < 1:93270‑M1/50‑45 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg < 1:4671627‑M1/50‑45 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg > 1:2543729‑M1/1‑6 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg > 1:3239033‑M1/1‑6 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg > 1:2821288‑M1/1‑6 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg < 1:2730742‑M1/50‑45 (MQ=255) aaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg > 1:5163179‑M1/1‑5 (MQ=255) aaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg > 1:1536453‑M1/1‑5 (MQ=255) aCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgca < 1:5074187‑M1/50‑47 (MQ=255) aCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg > 1:578154‑M1/1‑4 (MQ=255) cATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcag > 1:514780‑M1/1‑3 (MQ=255) aTtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcagg < 1:5278008‑M1/50‑49 (MQ=255) aTtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcag > 1:4752230‑M1/1‑2 (MQ=255) aTtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcag > 1:3529988‑M1/1‑2 (MQ=255) ttataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcagga < 1:540978‑M1/50‑50 (MQ=255) ttataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcagga < 1:295336‑M1/50‑50 (MQ=255) | GGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCG > NC_000913/3453879‑3453976 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |