| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 93 [0] | [0] 89 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 76 (1.170) | 50/88 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATG > NC_000913/565005‑565103 | agcagccagcttGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC > 1:1336024‑M1/3‑50 (MQ=255)aTCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC > 1:61525‑M1/1‑50 (MQ=255)aTCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC < 1:1416209‑M1/50‑1 (MQ=255)aTCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC > 1:3249538‑M1/1‑50 (MQ=255)aTCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC > 1:1869338‑M1/1‑50 (MQ=255) tCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCc < 1:5182003‑M1/50‑2 (MQ=255) tCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCc < 1:4732756‑M1/50‑2 (MQ=255) cagccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct > 1:764221‑M1/1‑48 (MQ=255) cagccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct > 1:1548555‑M1/1‑48 (MQ=255) cagccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct > 1:1647626‑M1/1‑48 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctc < 1:1982169‑M1/50‑4 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct > 1:4084902‑M1/1‑47 (MQ=255) gccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctca > 1:1569198‑M1/1‑46 (MQ=255) ccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcat < 1:1968472‑M1/50‑6 (MQ=255) ccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcat < 1:1767010‑M1/50‑6 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:3695452‑M1/1‑44 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:2382232‑M1/1‑44 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt < 1:4342‑M1/50‑7 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:5157541‑M1/1‑44 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcattt < 1:3786313‑M1/50‑8 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:2494247‑M1/1‑43 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:880344‑M1/1‑43 (MQ=255) gcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcattta > 1:1003027‑M1/1‑42 (MQ=255) gcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcattta < 1:4938701‑M1/50‑9 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttat < 1:4479058‑M1/50‑10 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttat < 1:4217905‑M1/50‑10 (MQ=255) ttGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatg > 1:1485826‑M1/1‑40 (MQ=255) tGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgc > 1:2310050‑M1/1‑39 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatg < 1:4507470‑M1/48‑11 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatg < 1:921014‑M1/48‑11 (MQ=255) cccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcc < 1:2054067‑M1/49‑13 (MQ=255) ccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccg < 1:4394364‑M1/50‑15 (MQ=255) ccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccg > 1:5564120‑M1/1‑36 (MQ=255) ccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccg > 1:1940576‑M1/1‑36 (MQ=255) aGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtc > 1:3124124‑M1/1‑34 (MQ=255) aGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtc < 1:737760‑M1/50‑17 (MQ=255) aGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtc > 1:3745411‑M1/1‑34 (MQ=255) aGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtc > 1:2804799‑M1/1‑34 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctt < 1:6847‑M1/50‑19 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctta < 1:1445962‑M1/50‑20 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatc < 1:4091611‑M1/50‑22 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttat < 1:4351025‑M1/49‑21 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatcc < 1:2109659‑M1/49‑23 (MQ=255) tGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtt > 1:1849230‑M1/1‑25 (MQ=255) tGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtt > 1:1551561‑M1/1‑25 (MQ=255) gAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgttt > 1:572494‑M1/1‑24 (MQ=255) gAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgttt > 1:1736070‑M1/1‑24 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgttcc < 1:3343979‑M1/50‑28 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtt < 1:2610839‑M1/48‑26 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtt < 1:4713659‑M1/48‑26 (MQ=255) ggTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttcc < 1:3847124‑M1/50‑29 (MQ=255) ggTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttcc > 1:1946590‑M1/1‑22 (MQ=255) ggTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttcc < 1:4766751‑M1/50‑29 (MQ=255) tCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgc > 1:976762‑M1/1‑20 (MQ=255) tCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgc > 1:1826388‑M1/1‑20 (MQ=255) cATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct > 1:4162777‑M1/1‑19 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctt > 1:2570856‑M1/1‑18 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctt > 1:2200502‑M1/1‑18 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct < 1:1277240‑M1/49‑32 (MQ=255) aTGGAAACGAAAATCTTCctcatttatgcccgtcttatccgtttccgctt < 1:1409443‑M1/50‑33 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 1:4799653‑M1/50‑34 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 1:2175807‑M1/50‑34 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 1:25502‑M1/50‑34 (MQ=255) ggAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttg > 1:736975‑M1/1‑16 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgc > 1:4835986‑M1/1‑15 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgc > 1:2890291‑M1/1‑15 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttg < 1:4135565‑M1/49‑35 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttg < 1:4355209‑M1/49‑35 (MQ=255) aaaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcc > 1:2760864‑M1/1‑14 (MQ=255) aaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccc > 1:3044401‑M1/1‑13 (MQ=255) aCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccct < 1:409237‑M1/50‑39 (MQ=255) cGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt > 1:4132609‑M1/1‑11 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttc < 1:1661551‑M1/50‑41 (MQ=255) gAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttca < 1:3109910‑M1/50‑42 (MQ=255) gAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttca < 1:3556510‑M1/50‑42 (MQ=255) aaaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac < 1:1151754‑M1/50‑43 (MQ=255) aaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacc < 1:2973869‑M1/50‑44 (MQ=255) aaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac > 1:3301503‑M1/1‑7 (MQ=255) aaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac > 1:1765646‑M1/1‑7 (MQ=255) aaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac > 1:1859766‑M1/1‑7 (MQ=255) aTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca > 1:241636‑M1/1‑6 (MQ=255) cTTCctcatttatgcccgtcttatccgtttccgctttgcccttcaccaca > 1:316054‑M1/1‑4 (MQ=255) ttCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 1:1537212‑M1/1‑3 (MQ=255) tCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 1:2293147‑M1/1‑2 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatca > 1:29960‑M1/1‑1 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatc < 1:4285040‑M1/49‑49 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat < 1:2453751‑M1/48‑48 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat < 1:5142972‑M1/48‑48 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat < 1:1710654‑M1/48‑48 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat < 1:3189409‑M1/48‑48 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccaca < 1:760699‑M1/47‑47 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccaca < 1:126567‑M1/47‑47 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccaca < 1:4639852‑M1/47‑47 (MQ=255) | ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGATG > NC_000913/565005‑565103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |