| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 93 [0] | [0] 89 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 76 (1.170) | 50/88 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
CTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTTCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCAC > NC_000913/586060‑586158 | tcagccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcc < 1:4732756‑M2/1‑1 (MQ=255)tcagccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcc < 1:5182003‑M2/1‑1 (MQ=255) cagccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCt > 1:764221‑M2/49‑50 (MQ=255) cagccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCt > 1:1548555‑M2/49‑50 (MQ=255) cagccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCt > 1:1647626‑M2/49‑50 (MQ=255) agccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCt > 1:4084902‑M2/48‑49 (MQ=255) agccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTc < 1:1982169‑M2/3‑1 (MQ=255) gccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCa > 1:1569198‑M2/47‑50 (MQ=255) ccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAt < 1:1968472‑M2/5‑1 (MQ=255) ccagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAt < 1:1767010‑M2/5‑1 (MQ=255) cagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 1:3695452‑M2/45‑50 (MQ=255) cagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 1:2382232‑M2/45‑50 (MQ=255) cagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt < 1:4342‑M2/6‑1 (MQ=255) cagcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 1:5157541‑M2/45‑50 (MQ=255) agcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAttt < 1:3786313‑M2/7‑1 (MQ=255) agcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 1:880344‑M2/44‑49 (MQ=255) agcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCAtt > 1:2494247‑M2/44‑49 (MQ=255) gcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTa < 1:4938701‑M2/8‑1 (MQ=255) gcttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTa > 1:1003027‑M2/43‑50 (MQ=255) cttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTAt < 1:4479058‑M2/9‑1 (MQ=255) cttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTAt < 1:4217905‑M2/9‑1 (MQ=255) ttgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATg > 1:1485826‑M2/41‑50 (MQ=255) tgcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGc > 1:2310050‑M2/40‑50 (MQ=255) gcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATg < 1:4507470‑M2/10‑1 (MQ=255) gcccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATg < 1:921014‑M2/10‑1 (MQ=255) cccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGcc < 1:2054067‑M2/12‑1 (MQ=255) ccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCg > 1:1940576‑M2/37‑50 (MQ=255) ccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCg > 1:5564120‑M2/37‑50 (MQ=255) ccaggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCg < 1:4394364‑M2/14‑1 (MQ=255) aggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTc > 1:3745411‑M2/35‑50 (MQ=255) aggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTc < 1:737760‑M2/16‑1 (MQ=255) aggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTc > 1:3124124‑M2/35‑50 (MQ=255) aggtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTc > 1:2804799‑M2/35‑50 (MQ=255) gtgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCtt < 1:6847‑M2/18‑1 (MQ=255) tgtgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTa < 1:1445962‑M2/19‑1 (MQ=255) tgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTAt < 1:4351025‑M2/20‑1 (MQ=255) tgtctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATc < 1:4091611‑M2/21‑1 (MQ=255) tctgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATcc < 1:2109659‑M2/22‑1 (MQ=255) tgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGtt > 1:1551561‑M2/26‑50 (MQ=255) tgaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGtt > 1:1849230‑M2/26‑50 (MQ=255) gaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGttt > 1:572494‑M2/25‑50 (MQ=255) gaggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGttt > 1:1736070‑M2/25‑50 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCcgttcc < 1:3343979‑M2/27‑3 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGtt < 1:2610839‑M2/25‑1 (MQ=255) aggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGtt < 1:4713659‑M2/25‑1 (MQ=255) ggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTcc < 1:3847124‑M2/28‑1 (MQ=255) ggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTcc > 1:1946590‑M2/23‑50 (MQ=255) ggtcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTcc < 1:4766751‑M2/28‑1 (MQ=255) tcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGc > 1:976762‑M2/21‑50 (MQ=255) tcatggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGc > 1:1826388‑M2/21‑50 (MQ=255) catggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCt > 1:4162777‑M2/20‑50 (MQ=255) atggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCtt > 1:2200502‑M2/19‑50 (MQ=255) atggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCtt > 1:2570856‑M2/19‑50 (MQ=255) atggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCt < 1:1277240‑M2/31‑1 (MQ=255) atggaaacgaaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCtt < 1:1409443‑M2/32‑1 (MQ=255) tggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCttt < 1:2175807‑M2/33‑1 (MQ=255) tggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCttt < 1:4799653‑M2/33‑1 (MQ=255) tggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCttt < 1:25502‑M2/33‑1 (MQ=255) ggaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTg > 1:736975‑M2/17‑50 (MQ=255) gaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTg < 1:4135565‑M2/34‑1 (MQ=255) gaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTg < 1:4355209‑M2/34‑1 (MQ=255) gaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGc > 1:2890291‑M2/16‑50 (MQ=255) gaaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGc > 1:4835986‑M2/16‑50 (MQ=255) aaacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGcc > 1:2760864‑M2/15‑50 (MQ=255) aacggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGccc > 1:3044401‑M2/14‑50 (MQ=255) acggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCt < 1:409237‑M2/38‑1 (MQ=255) cggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCtt > 1:4132609‑M2/12‑50 (MQ=255) ggaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTc < 1:1661551‑M2/40‑1 (MQ=255) gaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTca < 1:3109910‑M2/41‑1 (MQ=255) gaaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTca < 1:3556510‑M2/41‑1 (MQ=255) aaatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcac < 1:1151754‑M2/42‑1 (MQ=255) aatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcacc < 1:2973869‑M2/43‑1 (MQ=255) aatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcac > 1:3301503‑M2/8‑49 (MQ=255) aatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcac > 1:1765646‑M2/8‑49 (MQ=255) aatcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcac > 1:1859766‑M2/8‑49 (MQ=255) atcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTcacca > 1:241636‑M2/7‑50 (MQ=255) cttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACcaca > 1:316054‑M2/5‑50 (MQ=255) ttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAt > 1:1537212‑M2/4‑50 (MQ=255) tcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAt > 1:2293147‑M2/3‑49 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACcaca < 1:4639852‑M2/46‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACcaca < 1:760699‑M2/46‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACcaca < 1:126567‑M2/46‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAt < 1:5142972‑M2/47‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAt < 1:1710654‑M2/47‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAt < 1:2453751‑M2/47‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAt < 1:3189409‑M2/47‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATc < 1:4285040‑M2/48‑1 (MQ=255) cCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCa > 1:29960‑M2/2‑50 (MQ=255) cTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCAc < 1:83799/50‑1 (MQ=255) | CTAAGTCGTGGGCCGCAGGTTCGAATCCTGCAGGGCGCGCCATTTCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATCAC > NC_000913/586060‑586158 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |