| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,400,325 | Δ81,931 bp | [abgT]–[azoR] | 87 genes [abgT], abgB, abgA, abgR, mcaS, smrA, dgcM, zntB, fnrS, ynaL, dbpA, ttcA, intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH‑5, lomR, stfR, tfaR, pinR, ynaE, ynaM, ttcC, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD‑2, insC‑2, ydbA, insI‑2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, [azoR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1400325 | 1482255 | 81931 | 74 [0] | [0] 74 | [abgT]–[azoR] | [abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1400324 | 0 (0.000) | 73 (1.000) | 44/98 | 0.1 | 100% | coding (1450/1527 nt) | abgT | p‑aminobenzoyl glutamate:H(+) symporter |
| ? | NC_000913 | 1482256 = | 0 (0.000) | coding (605/606 nt) | azoR | FMN dependent NADH:quinone oxidoreductase | |||||
GACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGACTAACGAATAGTAAGTACCC > NC_000913/1400273‑1400373 | gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac < 1:4454720/50‑1 (MQ=255) aTCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 1:3748153‑M1/1‑45 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgca < 1:55864‑M1/50‑7 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgc < 1:3341970‑M1/49‑6 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgc < 1:1851836‑M1/49‑6 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg < 1:852999‑M1/48‑5 (MQ=255) ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcaga < 1:3222809‑M1/50‑9 (MQ=255) ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcaga < 1:1268232‑M1/50‑9 (MQ=255) ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag < 1:426863‑M1/49‑8 (MQ=255) ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag < 1:586394‑M1/49‑8 (MQ=255) ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag > 1:1898464‑M1/1‑42 (MQ=255) gCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaa < 1:5357230‑M1/50‑10 (MQ=255) cAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa < 1:2658761‑M1/50‑11 (MQ=255) cAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa > 1:2943771‑M1/1‑40 (MQ=255) aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaac < 1:1291206‑M1/50‑12 (MQ=255) aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa > 1:1906320‑M1/1‑39 (MQ=255) aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa > 1:2391586‑M1/1‑39 (MQ=255) gACCGACAAGATACCACGCCAGC‑ATATC‑GCAGCCATACtatgcagaaaca < 1:3538842‑M1/50‑13 (MQ=255) aCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaa > 1:778963‑M1/1‑37 (MQ=255) ccGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat > 1:181378‑M1/1‑36 (MQ=255) ccGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat < 1:3205876‑M1/50‑15 (MQ=255) cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg > 1:5101949‑M1/1‑35 (MQ=255) cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg < 1:3113719‑M1/50‑16 (MQ=255) cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg < 1:3394928‑M1/50‑16 (MQ=255) gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc < 1:549443‑M1/50‑17 (MQ=255) gACAAGATACCACGCCAGC‑ACAAC‑GCAGCCATACtatgcagaaacaatgc < 1:1116931‑M1/50‑17 (MQ=255) cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg < 1:3913075‑M1/50‑19 (MQ=255) aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt < 1:1960409‑M1/50‑20 (MQ=255) gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcg < 1:374285‑M1/50‑22 (MQ=255) gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcg < 1:4185901‑M1/50‑22 (MQ=255) aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga < 1:5367153‑M1/50‑23 (MQ=255) aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga < 1:922931‑M1/50‑23 (MQ=255) aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga < 1:1258771‑M1/50‑23 (MQ=255) tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat < 1:3368008‑M1/50‑24 (MQ=255) ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatgg > 1:1419617‑M1/1‑25 (MQ=255) ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatgg > 1:4164860‑M1/1‑25 (MQ=255) ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg < 1:816171‑M1/49‑25 (MQ=255) ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg < 1:646777‑M1/49‑25 (MQ=255) cACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggc < 1:3492430‑M1/50‑27 (MQ=255) cACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggc > 1:2227478‑M1/1‑24 (MQ=255) aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct < 1:3140771‑M1/50‑28 (MQ=255) gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc > 1:1617438‑M1/1‑21 (MQ=255) gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc < 1:1804440‑M1/50‑30 (MQ=255) tcgcagccaTACtatgcagaaacaatgctgtcgatggctgcttttgcgt > 1:138496‑M1/3‑12 (MQ=255) cagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcaga > 1:3487908‑M1/1‑9 (MQ=255) cagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcaga < 1:1658292‑M1/50‑42 (MQ=255) cagcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcaga > 1:5062291‑M1/1‑9 (MQ=255) agcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagac > 1:202012‑M1/1‑8 (MQ=255) agcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagac < 1:4686990‑M1/50‑43 (MQ=255) agcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagac < 1:4720‑M1/50‑43 (MQ=255) agcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagac < 1:3631248‑M1/50‑43 (MQ=255) agcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagac > 1:2206813‑M1/1‑8 (MQ=255) gcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagact < 1:809648‑M1/50‑44 (MQ=255) gcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagact < 1:4868025‑M1/50‑44 (MQ=255) gcCATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagact < 1:1691321‑M1/50‑44 (MQ=255) ccATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactg < 1:4814150‑M1/50‑45 (MQ=255) ccATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactg > 1:659258‑M1/1‑6 (MQ=255) cATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgt > 1:5320595‑M1/1‑5 (MQ=255) cATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgt < 1:832085‑M1/50‑46 (MQ=255) cATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgt < 1:3771853‑M1/50‑46 (MQ=255) cATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgt > 1:5139854‑M1/1‑5 (MQ=255) cATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgt < 1:2181583‑M1/50‑46 (MQ=255) cATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgt > 1:5065261‑M1/1‑5 (MQ=255) cATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgt > 1:3996394‑M1/1‑5 (MQ=255) cATACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgt < 1:2057831‑M1/50‑46 (MQ=255) aTACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtg < 1:1659308‑M1/50‑47 (MQ=255) aTACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtg < 1:873002‑M1/50‑47 (MQ=255) aTACtatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtg < 1:4098110‑M1/50‑47 (MQ=255) ctatgcagagacaatgctgtcgatggctgcttttgcgtcagactgtgctt > 1:354697‑M1/1‑1 (MQ=255) ctatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgctt < 1:2750351‑M1/50‑50 (MQ=255) ctatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgctt < 1:2352764‑M1/50‑50 (MQ=255) ctatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgctt < 1:1580232‑M1/50‑50 (MQ=255) ctatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgct < 1:3734960‑M1/49‑49 (MQ=255) ctatgcagaaacaatgctgtcgatggctgcttttgcgtcagactgtgct < 1:2155055‑M1/49‑49 (MQ=255) | GACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGACTAACGAATAGTAAGTACCC > NC_000913/1400273‑1400373 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |