| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,400,325 | Δ81,931 bp | [abgT]–[azoR] | 87 genes [abgT], abgB, abgA, abgR, mcaS, smrA, dgcM, zntB, fnrS, ynaL, dbpA, ttcA, intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH‑5, lomR, stfR, tfaR, pinR, ynaE, ynaM, ttcC, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD‑2, insC‑2, ydbA, insI‑2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, [azoR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1400325 | 1482255 | 81931 | 74 [0] | [0] 74 | [abgT]–[azoR] | [abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1400324 | 0 (0.000) | 73 (1.000) | 44/98 | 0.1 | 100% | coding (1450/1527 nt) | abgT | p‑aminobenzoyl glutamate:H(+) symporter |
| ? | NC_000913 | 1482256 = | 0 (0.000) | coding (605/606 nt) | azoR | FMN dependent NADH:quinone oxidoreductase | |||||
GATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTT > NC_000913/1482211‑1482305 | atcggcagaccgacaagataccacgccagcacatcgcagccatacTATg > 1:3748153‑M2/46‑49 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATg < 1:852999‑M2/4‑1 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATGc < 1:3341970‑M2/5‑1 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATGc < 1:1851836‑M2/5‑1 (MQ=255) tcggcagaccgacaagataccacgccagcacatcgcagccatacTATGCa < 1:55864‑M2/6‑1 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAg < 1:586394‑M2/7‑1 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAg > 1:1898464‑M2/43‑49 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAg < 1:426863‑M2/7‑1 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAGa < 1:1268232‑M2/8‑1 (MQ=255) ggcagaccgacaagataccacgccagcacatcgcagccatacTATGCAGa < 1:3222809‑M2/8‑1 (MQ=255) gcagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaa < 1:5357230‑M2/9‑1 (MQ=255) cagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa > 1:2943771‑M2/41‑50 (MQ=255) cagaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa < 1:2658761‑M2/10‑1 (MQ=255) agaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa > 1:2391586‑M2/40‑49 (MQ=255) agaccgacaagataccacgccagcacatcgcagccatacTATGCAGaaa > 1:1906320‑M2/40‑49 (MQ=255) agaccgacaagataccacgccagcacatcgcagccatacTATGCAGAAAc < 1:1291206‑M2/11‑1 (MQ=255) gaccgacaagataccacgccagcatatcgcagccatacTATGCAGAAACa < 1:3538842‑M2/12‑1 (MQ=255) accgacaagataccacgccagcacatcgcagccatacTATGCAGAAACaa > 1:778963‑M2/38‑50 (MQ=255) ccgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAAt < 1:3205876‑M2/14‑1 (MQ=255) ccgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAAt > 1:181378‑M2/37‑50 (MQ=255) cgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATg < 1:3394928‑M2/15‑1 (MQ=255) cgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATg > 1:5101949‑M2/36‑50 (MQ=255) cgacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATg < 1:3113719‑M2/15‑1 (MQ=255) gacaagataccacgccagcacatcgcagccatacTATGCAGAAACAATGc < 1:549443‑M2/16‑1 (MQ=255) gacaagataccacgccagcacaacgcagccatacTATGCAGAAACAATGc < 1:1116931‑M2/16‑1 (MQ=255) caagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTg < 1:3913075‑M2/18‑1 (MQ=255) aagataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGt < 1:1960409‑M2/19‑1 (MQ=255) gataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCg < 1:4185901‑M2/21‑1 (MQ=255) gataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCg < 1:374285‑M2/21‑1 (MQ=255) ataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGa < 1:5367153‑M2/22‑1 (MQ=255) ataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGa < 1:922931‑M2/22‑1 (MQ=255) ataccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGa < 1:1258771‑M2/22‑1 (MQ=255) taccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGAt < 1:3368008‑M2/23‑1 (MQ=255) ccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATgg > 1:4164860‑M2/26‑50 (MQ=255) ccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATgg > 1:1419617‑M2/26‑50 (MQ=255) ccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATg < 1:816171‑M2/24‑1 (MQ=255) ccacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATg < 1:646777‑M2/24‑1 (MQ=255) cacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgc < 1:3492430‑M2/26‑1 (MQ=255) cacgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgc > 1:2227478‑M2/25‑50 (MQ=255) acgccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgct < 1:3140771‑M2/27‑1 (MQ=255) gccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctgc > 1:1617438‑M2/22‑50 (MQ=255) gccagcacatcgcagccatacTATGCAGAAACAATGCTGTCGATGgctgc < 1:1804440‑M2/29‑1 (MQ=255) tcgcagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGt > 1:138496‑M2/13‑49 (MQ=255) cagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGa > 1:3487908‑M2/10‑50 (MQ=255) cagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGa < 1:1658292‑M2/41‑1 (MQ=255) cagccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGa > 1:5062291‑M2/10‑50 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAc < 1:4686990‑M2/42‑1 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAc > 1:202012‑M2/9‑50 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAc < 1:4720‑M2/42‑1 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAc < 1:3631248‑M2/42‑1 (MQ=255) agccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAc > 1:2206813‑M2/9‑50 (MQ=255) gccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACt < 1:809648‑M2/43‑1 (MQ=255) gccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACt < 1:4868025‑M2/43‑1 (MQ=255) gccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACt < 1:1691321‑M2/43‑1 (MQ=255) ccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtg > 1:659258‑M2/7‑50 (MQ=255) ccatacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtg < 1:4814150‑M2/44‑1 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt < 1:2181583‑M2/45‑1 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt < 1:832085‑M2/45‑1 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt > 1:5320595‑M2/6‑50 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt > 1:5139854‑M2/6‑50 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt > 1:5065261‑M2/6‑50 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt < 1:3771853‑M2/45‑1 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt > 1:3996394‑M2/6‑50 (MQ=255) catacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgt < 1:2057831‑M2/45‑1 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg < 1:4098110‑M2/46‑1 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg < 1:873002‑M2/46‑1 (MQ=255) atacTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACtgtg < 1:1659308‑M2/46‑1 (MQ=255) cTATGCAGAGACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCtt > 1:354697‑M2/2‑50 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCtt < 1:1580232‑M2/49‑1 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCtt < 1:2352764‑M2/49‑1 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCtt < 1:2750351‑M2/49‑1 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt < 1:3734960‑M2/48‑1 (MQ=255) cTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCt < 1:2155055‑M2/48‑1 (MQ=255) tATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCttt > 1:3686004/1‑50 (MQ=255) | GATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTT > NC_000913/1482211‑1482305 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |