Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,466,545 Δ9,634 bp [intS]–[ypdJ] 15 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2466545 2476178 9634 73 [0] [0] 72 [intS]–[ypdJ] [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 24665440 (0.000)71 (1.230) 50/98 0.0 100% intergenic (+161/‑1) argW/intS tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase
?NC_000913 2476179 = 0 (0.000)coding (86/141 nt) ypdJ CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ

TGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2466496‑2466544
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAA  >  NC_000913/2476179‑2476226
                                                                                                 
TGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCT                                                 <  1:1612949/50‑1
  ACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAG                                               <  1:1531413/50‑1
   CGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGA                                              <  1:2974585/50‑1
   CGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGA                                              <  1:3350335/50‑1
   CGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTA                                                >  1:3310837/1‑48
    GGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAG                                             <  1:806135/50‑1
    GGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAG                                             <  1:3019780/50‑1
    GGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAG                                             <  1:2167530/50‑1
     GGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGC                                            <  1:1171427/50‑1
       TAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCA                                          >  1:3450656/1‑50
       TAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCA                                          >  1:148031/1‑50
       TAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCA                                          >  1:1531916/1‑50
        AAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCA                                          >  1:2403613/1‑49
         AAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA                                        >  1:2152364/1‑50
         AAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA                                        >  1:1816855/1‑50
         AAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA                                        <  1:3065511/50‑1
         AAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATA                                        >  1:2914962/1‑50
           AAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACA                                      <  1:2495903/50‑1
            AGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAG                                     >  1:681789/1‑50
            AGTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAG                                     <  1:4087737/50‑1
             GTGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGC                                    >  1:2980335/1‑50
              TGGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCC                                   <  1:1333727/50‑1
               GGATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCT                                  >  1:2016320/1‑50
                GATAAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCT                                  >  1:2187181/1‑49
                   AAAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACA                              >  1:2042841/1‑50
                    AAATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACA                              <  1:1492386/49‑1
                      ATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTC                           <  1:2118141/50‑1
                      ATAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTC                           <  1:4221806/50‑1
                       TAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCG                          <  1:3972722/50‑1
                       TAATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTC                           >  1:864960/1‑49
                        AATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGA                         >  1:669456/1‑50
                        AATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGA                         >  1:1206619/1‑50
                         ATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT                        <  1:4124739/50‑1
                         ATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT                        >  1:922009/1‑50
                         ATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT                        <  1:1863740/50‑1
                         ATTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGA                         <  1:4137773/49‑1
                          TTTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATG                       <  1:4353199/50‑1
                           TTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT                        >  1:513558/1‑48
                           TTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT                        >  1:1523559/1‑48
                           TTTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGAT                        >  1:1329384/1‑48
                            TTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAG                     >  1:1723774/1‑50
                            TTACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAG                     >  1:111946/1‑50
                             TACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAG                     <  1:3984761/49‑1
                              ACCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGG                    <  1:3946538/49‑1
                               CCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCC                  >  1:2553692/1‑50
                               CCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCC                  >  1:1091586/1‑50
                               CCCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGC                   <  1:2462475/49‑1
                                CCACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCT                 <  1:1190177/50‑1
                                  ACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGT               >  1:4101669/1‑50
                                  ACCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGT               >  1:2528469/1‑50
                                   CCGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGT               >  1:3273693/1‑49
                                    CGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCA             <  1:903733/50‑1
                                    CGGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCA             <  1:3077840/50‑1
                                     GGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAG            >  1:3063764/1‑50
                                     GGATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAG            >  1:4067747/1‑50
                                      GATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGT           <  1:1048715/50‑1
                                       ATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTT          >  1:79210/1‑50
                                       ATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTT          <  1:375844/50‑1
                                       ATTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTT          <  1:2482357/50‑1
                                        TTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTT         <  1:3055653/50‑1
                                        TTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTT         <  1:3038803/50‑1
                                        TTTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTT         <  1:674632/50‑1
                                         TTTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTC        >  1:2506701/1‑50
                                          TTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCT       >  1:2003570/1‑50
                                          TTTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTC        <  1:3639554/49‑1
                                           TTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCT       >  1:2713030/1‑49
                                           TTACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCT       <  1:132340/49‑1
                                             ACCCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCACTTTCTTA     >  1:3662472/1‑49
                                               CCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAA  >  1:1759663/1‑50
                                               CCTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAA  >  1:277837/1‑50
                                                CTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAA  >  1:888017/1‑49
                                                                                                 
TGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2466496‑2466544
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAA  >  NC_000913/2476179‑2476226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.