| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,466,545 | Δ9,634 bp | [intS]–[ypdJ] | 15 genes [intS], yfdG, yfdH, yfdI, yfdK, yfdL, yfdM, yfdN, yfdO, yfdP, yfdQ, yfdR, yfdS, [yfdT], [ypdJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2466545 | 2476178 | 9634 | 73 [0] | [0] 72 | [intS]–[ypdJ] | [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2466544 | 0 (0.000) | 71 (1.230) | 50/98 | 0.0 | 100% | intergenic (+161/‑1) | argW/intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase |
| ? | NC_000913 | 2476179 = | 0 (0.000) | coding (86/141 nt) | ypdJ | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ | |||||
ATGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCATGCTCACCGTTAAGCAGATTGAAGCAGCAAAGCCGAAAGAAAAACCA > NC_000913/2466495‑2466592 | aTGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc < 1:1768717/50‑1 (MQ=255) tGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCt < 1:1612949‑M1/50‑2 (MQ=255) gACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc > 1:4077896/1‑48 (MQ=255) aCGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtag < 1:1531413‑M1/50‑4 (MQ=255) cGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtaga < 1:2974585‑M1/50‑5 (MQ=255) cGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtaga < 1:3350335‑M1/50‑5 (MQ=255) cGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCta > 1:3310837‑M1/1‑46 (MQ=255) gggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagag < 1:806135‑M1/50‑6 (MQ=255) gggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagag < 1:3019780‑M1/50‑6 (MQ=255) gggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagag < 1:2167530‑M1/50‑6 (MQ=255) ggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc < 1:1171427‑M1/50‑7 (MQ=255) tAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcca > 1:148031‑M1/1‑42 (MQ=255) tAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcca > 1:3450656‑M1/1‑42 (MQ=255) tAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcca > 1:1531916‑M1/1‑42 (MQ=255) aaaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcca > 1:2403613‑M1/1‑41 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:2152364‑M1/1‑40 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:1816855‑M1/1‑40 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata < 1:3065511‑M1/50‑11 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:2914962‑M1/1‑40 (MQ=255) aaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccataca < 1:2495903‑M1/50‑13 (MQ=255) aGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacag < 1:4087737‑M1/50‑14 (MQ=255) aGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacag > 1:681789‑M1/1‑37 (MQ=255) gTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagc > 1:2980335‑M1/1‑36 (MQ=255) tGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcc < 1:1333727‑M1/50‑16 (MQ=255) ggATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcct > 1:2016320‑M1/1‑34 (MQ=255) gATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcct > 1:2187181‑M1/1‑33 (MQ=255) aaaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcaca > 1:2042841‑M1/1‑30 (MQ=255) aaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcaca < 1:1492386‑M1/49‑21 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc < 1:2118141‑M1/50‑24 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc < 1:4221806‑M1/50‑24 (MQ=255) taatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcg < 1:3972722‑M1/50‑25 (MQ=255) taatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:864960‑M1/1‑26 (MQ=255) aatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcga > 1:1206619‑M1/1‑25 (MQ=255) aatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcga > 1:669456‑M1/1‑25 (MQ=255) atTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat < 1:4124739‑M1/50‑27 (MQ=255) atTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:922009‑M1/1‑24 (MQ=255) atTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat < 1:1863740‑M1/50‑27 (MQ=255) atTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcga < 1:4137773‑M1/49‑26 (MQ=255) ttttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatg < 1:4353199‑M1/50‑28 (MQ=255) tttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:1523559‑M1/1‑22 (MQ=255) tttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:513558‑M1/1‑22 (MQ=255) tttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:1329384‑M1/1‑22 (MQ=255) ttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgag > 1:1723774‑M1/1‑21 (MQ=255) ttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgag > 1:111946‑M1/1‑21 (MQ=255) tACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgag < 1:3984761‑M1/49‑30 (MQ=255) aCCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgagg < 1:3946538‑M1/49‑31 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcc > 1:2553692‑M1/1‑18 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcc > 1:1091586‑M1/1‑18 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggc < 1:2462475‑M1/49‑32 (MQ=255) ccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcct < 1:1190177‑M1/50‑34 (MQ=255) aCCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt > 1:2528469‑M1/1‑15 (MQ=255) aCCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt > 1:4101669‑M1/1‑15 (MQ=255) ccGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt > 1:3273693‑M1/1‑14 (MQ=255) cGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtca < 1:3077840‑M1/50‑38 (MQ=255) cGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtca < 1:903733‑M1/50‑38 (MQ=255) ggATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcag > 1:3063764‑M1/1‑12 (MQ=255) ggATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcag > 1:4067747‑M1/1‑12 (MQ=255) gATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagt < 1:1048715‑M1/50‑40 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt < 1:375844‑M1/50‑41 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt < 1:2482357‑M1/50‑41 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt > 1:79210‑M1/1‑10 (MQ=255) tttttACCCtagagccatacagcctcacactcgatgaggcctgtcagttt < 1:674632‑M1/50‑42 (MQ=255) tttttACCCtagagccatacagcctcacactcgatgaggcctgtcagttt < 1:3055653‑M1/50‑42 (MQ=255) tttttACCCtagagccatacagcctcacactcgatgaggcctgtcagttt < 1:3038803‑M1/50‑42 (MQ=255) ttttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttc > 1:2506701‑M1/1‑8 (MQ=255) tttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttct > 1:2003570‑M1/1‑7 (MQ=255) tttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttc < 1:3639554‑M1/49‑43 (MQ=255) ttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttct < 1:132340‑M1/49‑44 (MQ=255) ttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttct > 1:2713030‑M1/1‑6 (MQ=255) aCCCtagagccatacagcctcacactcgatgaggcctgtcactttctta > 1:3662472‑M1/1‑4 (MQ=255) cctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaa > 1:1759663‑M1/1‑2 (MQ=255) cctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaa > 1:277837‑M1/1‑2 (MQ=255) ctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaa > 1:888017‑M1/1‑1 (MQ=255) | ATGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCATGCTCACCGTTAAGCAGATTGAAGCAGCAAAGCCGAAAGAAAAACCA > NC_000913/2466495‑2466592 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |