| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 61 [0] | [0] 60 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 58 (1.020) | 42/96 | 0.0 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAA > NC_000913/2320094‑2320192 | cTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT < 1:2399014‑M1/50‑1 (MQ=255) tGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATt > 1:2849915‑M1/1‑49 (MQ=255) gATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt > 1:3209594‑M1/1‑48 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttc < 1:3519215‑M1/50‑4 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATt < 1:1665589‑M1/48‑2 (MQ=255) gCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcac < 1:1897955‑M1/49‑6 (MQ=255) aaTCCTGATGGTCATTGTCCCCACGCTTACTATTGGTTATATttcaccac > 1:4017648‑M1/1‑42 (MQ=255) aTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccact < 1:2463621‑M1/50‑10 (MQ=255) tCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccact > 1:809120‑M1/1‑40 (MQ=255) ccTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactca > 1:2509779‑M1/1‑39 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcat < 1:2379080‑M1/50‑13 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgc > 1:3580462‑M1/1‑35 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgc > 1:1783754‑M1/1‑35 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgc < 1:3227906‑M1/50‑16 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcatt < 1:2167495‑M1/48‑14 (MQ=255) ggTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgcca > 1:2644426‑M1/1‑33 (MQ=255) gTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgcca > 1:1815640‑M1/1‑32 (MQ=255) gTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgcca < 1:2633733‑M1/49‑18 (MQ=255) tCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccaca < 1:3451773‑M1/50‑20 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacatt > 1:4303243‑M1/1‑29 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacatt > 1:103171‑M1/1‑29 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacatt > 1:2452782‑M1/1‑29 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacatt > 1:3282321‑M1/1‑29 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacat < 1:321352‑M1/49‑21 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacat < 1:1103994‑M1/49‑21 (MQ=255) gTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcct > 1:528819‑M1/1‑26 (MQ=255) tCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcctt > 1:3539058‑M1/1‑25 (MQ=255) cccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttg > 1:3842894‑M1/1‑24 (MQ=255) cccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttg > 1:3211678‑M1/1‑24 (MQ=255) ccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttgt > 1:3808373‑M1/1‑23 (MQ=255) ccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttg < 1:1281923‑M1/49‑27 (MQ=255) ccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttg < 1:353900‑M1/49‑27 (MQ=255) cAACGCTTACTATTGGTTATATttcaccactcattgccacattccttgtg < 1:1298055‑M1/50‑29 (MQ=255) aaCGCTTTCTATTGGTTATATttcaccactcattgccacattccttgtgt < 1:2943122‑M1/50‑30 (MQ=255) aaCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgt < 1:543344‑M1/50‑30 (MQ=255) aaCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtg > 1:433386‑M1/1‑21 (MQ=255) aCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta < 1:4003724‑M1/50‑31 (MQ=255) aCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta > 1:2284458‑M1/1‑20 (MQ=255) aCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta < 1:1522398‑M1/50‑31 (MQ=255) cGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgtat < 1:3706991‑M1/50‑32 (MQ=255) cGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgtat < 1:3099914‑M1/50‑32 (MQ=255) cGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgtat < 1:1821753‑M1/50‑32 (MQ=255) cGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta > 1:653127‑M1/1‑19 (MQ=255) gCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta > 1:2962714‑M1/1‑18 (MQ=255) gCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta > 1:3576808‑M1/1‑18 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag > 1:1177580‑M1/1‑17 (MQ=255) tACTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 1:2868702‑M1/1‑15 (MQ=255) tACTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 1:1848316‑M1/1‑15 (MQ=255) cTATTGGTTATATttcaccactcattgccacattccttgtgtatagccag > 1:1651412‑M1/1‑13 (MQ=255) ggTTATATttcaccactcattgccacattccttgtgtatagccagccat < 1:4039452‑M1/49‑42 (MQ=255) gTTATATttcaccactcattgccacattccttgtgtatagccagccattt > 1:1272411‑M1/1‑7 (MQ=255) ttATATttcaccactcattgccacattccttgtgtatagccagccatttt > 1:3528440‑M1/1‑6 (MQ=255) ttATATttcaccactcattgccacattccttgtgtatagccagccatttt > 1:660328‑M1/1‑6 (MQ=255) tataTttcaccactcattgccacattccttgtgtatagccagccattttt > 1:749944‑M1/1‑5 (MQ=255) tatttcaccactcattgccacattccttgtgtatagccagccatttttta < 1:2898683‑M1/50‑48 (MQ=255) tatttcaccactcattgccacattccttgtgtatagccagccatttttt < 1:4226236‑M1/49‑47 (MQ=255) atttcaccactcattgccacattccttgtgtatagccagccattttttac > 1:1281301‑M1/1‑2 (MQ=255) atttcaccactcattgccacattccttgtgtatagccagccattttttac > 1:3891344‑M1/1‑2 (MQ=255) atttcaccactcattgccacattccttgtgtatagccagccattttttac > 1:3780908‑M1/1‑2 (MQ=255) tttcaccactcattgccacattccttgtgtatagccagccattttttacg < 1:3050221‑M1/50‑50 (MQ=255) tttcaccactcattgccacattccttgtgtatagccagccattttttac < 1:973363‑M1/49‑49 (MQ=255) | CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAA > NC_000913/2320094‑2320192 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |