| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 61 [0] | [0] 60 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 58 (1.020) | 42/96 | 0.0 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
TTGCGCCAAAACCTACAAGACCATAGAACCGCCAGCCTTTCGCCTTTTTTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336584‑2336681 | tgatggcaatcctgatggtcattgtcccaacgcttactattggttatatt > 1:2849915‑M2/50‑50 (MQ=255) gatggcaatcctgatggtcattgtcccaacgcttactattggttatattt > 1:3209594‑M2/49‑50 (MQ=255) atggcaatcctgatggtcattgtcccaacgcttactattggttatatt < 1:1665589‑M2/1‑1 (MQ=255) atggcaatcctgatggtcattgtcccaacgcttactattggttatatTTc < 1:3519215‑M2/3‑1 (MQ=255) gcaatcctgatggtcattgtcccaacgcttactattggttatatTTcac < 1:1897955‑M2/5‑1 (MQ=255) aatcctgatggtcattgtccccacgcttactattggttatatTTcaccac > 1:4017648‑M2/43‑50 (MQ=255) atcctgatggtcattgtcccaacgcttactattggttatatTTCACCACt < 1:2463621‑M2/9‑1 (MQ=255) tcctgatggtcattgtcccaacgcttactattggttatatTTCACCACt > 1:809120‑M2/41‑49 (MQ=255) cctgatggtcattgtcccaacgcttactattggttatatTTCACCACTCa > 1:2509779‑M2/40‑50 (MQ=255) ctgatggtcattgtcccaacgcttactattggttatatTTCACCACTCAt < 1:2379080‑M2/12‑1 (MQ=255) atggtcattgtcccaacgcttactattggttatatTTCACCACTCAtt < 1:2167495‑M2/13‑1 (MQ=255) atggtcattgtcccaacgcttactattggttatatTTCACCACTCATTGc < 1:3227906‑M2/15‑1 (MQ=255) atggtcattgtcccaacgcttactattggttatatTTCACCACTCATTGc > 1:1783754‑M2/36‑50 (MQ=255) atggtcattgtcccaacgcttactattggttatatTTCACCACTCATTGc > 1:3580462‑M2/36‑50 (MQ=255) ggtcattgtcccaacgcttactattggttatatTTCACCACTCATTGCca > 1:2644426‑M2/34‑50 (MQ=255) gtcattgtcccaacgcttactattggttatatTTCACCACTCATTGCca > 1:1815640‑M2/33‑49 (MQ=255) gtcattgtcccaacgcttactattggttatatTTCACCACTCATTGCca < 1:2633733‑M2/17‑1 (MQ=255) tcattgtcccaacgcttactattggttatatTTCACCACTCATTGCcaca < 1:3451773‑M2/19‑1 (MQ=255) attgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAtt > 1:3282321‑M2/30‑50 (MQ=255) attgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAtt > 1:2452782‑M2/30‑50 (MQ=255) attgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAtt > 1:4303243‑M2/30‑50 (MQ=255) attgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAtt > 1:103171‑M2/30‑50 (MQ=255) attgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAt < 1:1103994‑M2/20‑1 (MQ=255) attgtcccaacgcttactattggttatatTTCACCACTCATTGCCACAt < 1:321352‑M2/20‑1 (MQ=255) gtcccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCt > 1:528819‑M2/27‑50 (MQ=255) tcccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCtt > 1:3539058‑M2/26‑50 (MQ=255) cccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtg > 1:3842894‑M2/25‑50 (MQ=255) cccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtg > 1:3211678‑M2/25‑50 (MQ=255) ccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtgt > 1:3808373‑M2/24‑50 (MQ=255) ccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtg < 1:1281923‑M2/26‑1 (MQ=255) ccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtg < 1:353900‑M2/26‑1 (MQ=255) caacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtgtg < 1:1298055‑M2/28‑1 (MQ=255) aacgctttctattggttatatTTCACCACTCATTGCCACATTCCTTgtgt < 1:2943122‑M2/29‑1 (MQ=255) aacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtgtg > 1:433386‑M2/22‑49 (MQ=255) aacgcttactattggttatatTTCACCACTCATTGCCACATTCCTTgtgt < 1:543344‑M2/29‑1 (MQ=255) acgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta < 1:1522398‑M2/30‑1 (MQ=255) acgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta > 1:2284458‑M2/21‑50 (MQ=255) acgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta < 1:4003724‑M2/30‑1 (MQ=255) cgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGtat < 1:1821753‑M2/31‑1 (MQ=255) cgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGtat < 1:3706991‑M2/31‑1 (MQ=255) cgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGtat < 1:3099914‑M2/31‑1 (MQ=255) cgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta > 1:653127‑M2/20‑49 (MQ=255) gcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta > 1:3576808‑M2/19‑48 (MQ=255) gcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta > 1:2962714‑M2/19‑48 (MQ=255) cttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATag > 1:1177580‑M2/18‑50 (MQ=255) tactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc > 1:2868702‑M2/16‑49 (MQ=255) tactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc > 1:1848316‑M2/16‑49 (MQ=255) ctattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccag > 1:1651412‑M2/14‑50 (MQ=255) ggttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAt < 1:4039452‑M2/41‑1 (MQ=255) gttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttt > 1:1272411‑M2/8‑50 (MQ=255) ttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtttt > 1:660328‑M2/7‑50 (MQ=255) ttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtttt > 1:3528440‑M2/7‑50 (MQ=255) tatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttttt > 1:749944‑M2/6‑50 (MQ=255) tatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtttttt < 1:4226236‑M2/46‑1 (MQ=255) tatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTa < 1:2898683‑M2/47‑1 (MQ=255) atTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAc > 1:1281301‑M2/3‑50 (MQ=255) atTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAc > 1:3891344‑M2/3‑50 (MQ=255) atTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAc > 1:3780908‑M2/3‑50 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAc < 1:973363‑M2/48‑1 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACg < 1:3050221‑M2/49‑1 (MQ=255) | TTGCGCCAAAACCTACAAGACCATAGAACCGCCAGCCTTTCGCCTTTTTTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336584‑2336681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |