| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4400288 | 27 (0.470) | 34 (0.610) | 26/94 | 0.5 | 56.3% | coding (1/309 nt) | hfq | RNA‑binding protein Hfq |
| ? | NC_000913 | 4400296 = | 27 (0.490) | coding (9/309 nt) | hfq | RNA‑binding protein Hfq | |||||
CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG > NC_000913/4400239‑4400337 | cAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA > 1:1978766‑M1/1‑50 (MQ=255) aGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAt > 1:1965986/1‑50 (MQ=255) aGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA < 1:2005727‑M1/49‑1 (MQ=255) aGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA < 1:4301203‑M1/49‑1 (MQ=255) gAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgg > 1:1856445‑M1/1‑48 (MQ=255) tCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCt < 1:1702818/50‑1 (MQ=255) cGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggc > 1:1095954‑M1/1‑44 (MQ=255) gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCt > 1:3709700/1‑48 (MQ=255) aaaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAg < 1:2489722/50‑1 (MQ=255) aaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatc > 1:4136221‑M1/1‑41 (MQ=255) aGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatct < 1:1011373‑M1/50‑11 (MQ=255) aGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatct > 1:3092567‑M1/1‑40 (MQ=255) aGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatct < 1:3230738‑M1/50‑11 (MQ=255) aGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatct > 1:1922270‑M1/1‑40 (MQ=255) aGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatct > 1:1823739‑M1/1‑40 (MQ=255) aGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatct > 1:113958‑M1/1‑40 (MQ=255) aGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAggg < 1:3069665/50‑1 (MQ=255) gTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAgggg > 1:2841033/1‑49 (MQ=255) gTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGc < 1:2560771/50‑1 (MQ=255) ttCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGc > 1:729324/1‑49 (MQ=255) cAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttac > 1:741979‑M1/1‑35 (MQ=255) aaaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttaca < 1:640590‑M1/49‑16 (MQ=255) aaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaag < 1:2706528‑M1/50‑18 (MQ=255) aGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttac > 1:1092003‑M1/1‑32 (MQ=255) gTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagat < 1:421126‑M1/50‑20 (MQ=255) tACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatc < 1:281823‑M1/50‑21 (MQ=255) tACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTa > 1:1055156/1‑50 (MQ=255) aCAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatcc > 1:1145575‑M1/1‑29 (MQ=255) aCAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatcc > 1:4002362‑M1/1‑29 (MQ=255) aaTAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgtt < 1:2764118‑M1/50‑25 (MQ=255) aaTAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgtt < 1:3297098‑M1/50‑25 (MQ=255) aaTAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgtt > 1:3567401‑M1/1‑26 (MQ=255) aaTAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTAc > 1:2797066/1‑47 (MQ=255) aaTAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTAc > 1:3321423/1‑47 (MQ=255) tAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcc > 1:3520705‑M1/1‑24 (MQ=255) aaGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcct > 1:3901616‑M1/1‑23 (MQ=255) aGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctg < 1:309927‑M1/50‑29 (MQ=255) gCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctga < 1:3685817‑M1/50‑30 (MQ=255) gCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCg > 1:2967756/1‑50 (MQ=255) cATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaa > 1:3496865‑M1/1‑20 (MQ=255) cATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaa > 1:1253868‑M1/1‑20 (MQ=255) cATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaa > 1:2558981‑M1/1‑20 (MQ=255) atatAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGtt > 1:1074065/1‑50 (MQ=255) atatAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGtt > 1:952172/1‑50 (MQ=255) tataAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTc > 1:2805927/1‑50 (MQ=255) taAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCt < 1:1785898/50‑1 (MQ=255) taAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCt > 1:4120210/1‑50 (MQ=255) aaGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCt > 1:2155894/1‑49 (MQ=255) ggAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGaa > 1:28539/1‑50 (MQ=255) gAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgc > 1:1092520‑M1/1‑12 (MQ=255) gAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAAc > 1:443112/1‑50 (MQ=255) aaaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgt > 1:2464158‑M1/1‑10 (MQ=255) aaaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 1:3509884/1‑49 (MQ=255) aaaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 1:2264178/1‑49 (MQ=255) aaaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 1:2934001/1‑49 (MQ=255) aaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgtc < 1:2554831‑M1/50‑42 (MQ=255) aaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgtc > 1:2888018‑M1/1‑9 (MQ=255) agagaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgg > 1:959899‑M1/1‑6 (MQ=255) agaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaa > 1:615601‑M1/1‑4 (MQ=255) agaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCg > 1:2530431/1‑50 (MQ=255) gaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaac < 1:3440068‑M1/50‑48 (MQ=255) gaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGt < 1:2300924/50‑1 (MQ=255) aaTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc < 1:4119589/50‑1 (MQ=255) aggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacgt < 1:414222‑M1/50‑50 (MQ=255) aggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacgt > 1:3234463‑M1/1‑1 (MQ=255) aggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaac < 1:2031445‑M1/48‑48 (MQ=255) aTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCg > 1:1082183/1‑50 (MQ=255) | CAGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG > NC_000913/4400239‑4400337 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |