| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4400288 | 27 (0.470) | 34 (0.610) | 26/94 | 0.5 | 56.3% | coding (1/309 nt) | hfq | RNA‑binding protein Hfq |
| ? | NC_000913 | 4400296 = | 27 (0.490) | coding (9/309 nt) | hfq | RNA‑binding protein Hfq | |||||
AAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTG > NC_000913/4400247‑4400345 | aaaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAg < 1:2489722/50‑1 (MQ=255) gaatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaagg > 1:1856445‑M2/49‑50 (MQ=255) aGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAggg < 1:3069665/50‑1 (MQ=255) gTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAgggg > 1:2841033/1‑49 (MQ=255) gTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGc < 1:2560771/50‑1 (MQ=255) ttCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGc > 1:729324/1‑49 (MQ=255) cgaaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGc > 1:1095954‑M2/45‑49 (MQ=255) aaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATc > 1:4136221‑M2/42‑50 (MQ=255) aggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCt < 1:1011373‑M2/10‑1 (MQ=255) aggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCt < 1:3230738‑M2/10‑1 (MQ=255) aggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCt > 1:3092567‑M2/41‑50 (MQ=255) aggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCt > 1:113958‑M2/41‑50 (MQ=255) aggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCt > 1:1823739‑M2/41‑50 (MQ=255) aggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCt > 1:1922270‑M2/41‑50 (MQ=255) tACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTa > 1:1055156/1‑50 (MQ=255) caaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc > 1:741979‑M2/36‑49 (MQ=255) aaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACa < 1:640590‑M2/15‑1 (MQ=255) aagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAg < 1:2706528‑M2/17‑1 (MQ=255) aaTAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTAc > 1:3321423/1‑47 (MQ=255) aaTAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTAc > 1:2797066/1‑47 (MQ=255) agtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc > 1:1092003‑M2/33‑46 (MQ=255) gtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGAt < 1:421126‑M2/19‑1 (MQ=255) tacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATc < 1:281823‑M2/20‑1 (MQ=255) acaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATcc > 1:1145575‑M2/30‑50 (MQ=255) acaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATcc > 1:4002362‑M2/30‑50 (MQ=255) gCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCg > 1:2967756/1‑50 (MQ=255) atatAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGtt > 1:1074065/1‑50 (MQ=255) atatAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGtt > 1:952172/1‑50 (MQ=255) aataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGtt < 1:2764118‑M2/24‑1 (MQ=255) aataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGtt < 1:3297098‑M2/24‑1 (MQ=255) aataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGtt > 1:3567401‑M2/27‑50 (MQ=255) tataAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTc > 1:2805927/1‑50 (MQ=255) taagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTcc > 1:3520705‑M2/25‑50 (MQ=255) taAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCt < 1:1785898/50‑1 (MQ=255) taAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCt > 1:4120210/1‑50 (MQ=255) aagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCt > 1:3901616‑M2/24‑50 (MQ=255) agcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTg < 1:309927‑M2/28‑1 (MQ=255) aaGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCt > 1:2155894/1‑49 (MQ=255) gcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGa < 1:3685817‑M2/29‑1 (MQ=255) ggAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGaa > 1:28539/1‑50 (MQ=255) catataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGaa > 1:1253868‑M2/21‑50 (MQ=255) catataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGaa > 1:2558981‑M2/21‑50 (MQ=255) catataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGaa > 1:3496865‑M2/21‑50 (MQ=255) gAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAAc > 1:443112/1‑50 (MQ=255) aaaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 1:2264178/1‑49 (MQ=255) aaaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 1:3509884/1‑49 (MQ=255) aaaGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 1:2934001/1‑49 (MQ=255) gaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGc > 1:1092520‑M2/13‑50 (MQ=255) agaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCg > 1:2530431/1‑50 (MQ=255) gaATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGt < 1:2300924/50‑1 (MQ=255) aaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGt > 1:2464158‑M2/11‑50 (MQ=255) aagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc > 1:2888018‑M2/10‑50 (MQ=255) aagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc < 1:2554831‑M2/41‑1 (MQ=255) aaTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc < 1:4119589/50‑1 (MQ=255) aTGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCg > 1:1082183/1‑50 (MQ=255) tGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCgg > 1:2697021/1‑50 (MQ=255) agagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCgg > 1:959899‑M2/7‑49 (MQ=255) cTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGaa > 1:2471256/1‑50 (MQ=255) cTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGaa > 1:2384529/1‑50 (MQ=255) agaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGaa > 1:615601‑M2/5‑50 (MQ=255) gaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAc < 1:3440068‑M2/47‑1 (MQ=255) aGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAc < 1:2031445‑M2/47‑1 (MQ=255) aGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGt < 1:414222‑M2/49‑1 (MQ=255) aGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGt > 1:3234463‑M2/2‑50 (MQ=255) ggggCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACgtg > 1:3624298/1‑50 (MQ=255) | AAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTG > NC_000913/4400247‑4400345 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |