Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 1,872,030 | Δ1,437 bp | [dgcJ] | [dgcJ] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 1872030 | 1873466 | 1437 | 78 [0] | [0] 78 | [dgcJ] | [dgcJ] |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1872029 | 0 (0.000) | 74 (1.300) | 45/96 | 0.0 | 100% | intergenic (+169/‑12) | cdgI/dgcJ | putative c‑di‑GMP binding protein CdgI/putative diguanylate cyclase DgcJ |
? | NC_000913 | 1873467 = | 0 (0.000) | coding (1427/1491 nt) | dgcJ | putative diguanylate cyclase DgcJ |
GCTTCTCTTCCGGTATTTACGCGATGAAAGAAAACGATACGTTACATGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACAAA > NC_000913/1873419‑1873516 | gccgcaatcgaactttatctggttttctcgtttcactaaccgaaggagAt > 1:1104752‑M2/49‑50 (MQ=255) cgcaatcgaactttatctggttttctcgtttcactaaccgaaggagATGc > 1:910851‑M2/47‑50 (MQ=255) cgcaatcgaactttatctggttttctcgtttcactaaccgaaggagATGc > 1:799764‑M2/47‑50 (MQ=255) cgcaatcgaactttatctggttttctcgtttcactaaccgaaggagATGc > 1:59357‑M2/47‑50 (MQ=255) gcaatcgaactttatctggttttctcgtttcactaaccgaaggagATGCg > 1:1958270‑M2/46‑50 (MQ=255) gcaatcgaactttatctggttttctcgtttcactaaccgaaggagATGCg < 1:956970‑M2/5‑1 (MQ=255) atcgaactttatctggttttctcgtttcactaaccgaaggagATGCGtat < 1:389183‑M2/8‑1 (MQ=255) atcgaactttatctggttttctcgtttcactaaccgaaggagATGCGta > 1:80081‑M2/43‑49 (MQ=255) tcgaactttatctggttttctcgtttcactaaccgaaggagATGCGtat > 1:1714677‑M2/42‑49 (MQ=255) cgaactttatctggttttctcgtttcactaaccgaaggagATGCGtata > 1:2131414‑M2/41‑49 (MQ=255) gaactttatctggttttctcgtttcactaaccgaaggagATGCGtata > 1:2369881‑M2/40‑48 (MQ=255) gaactttatctggttttctcgtttcactaaccgaaggagATGCGTATaaa < 1:972360‑M2/11‑1 (MQ=255) gaactttatctggttttctcgtttcactaaccgaaggagATGCGTATaa < 1:3992042‑M2/10‑1 (MQ=255) gaactttatctggttttctcgtttcactaaccgaaggagATGCGTATaa < 1:2960757‑M2/10‑1 (MQ=255) aactttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAg < 1:1906356‑M2/12‑1 (MQ=255) aactttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAg < 1:2067726‑M2/12‑1 (MQ=255) aactttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAg > 1:1654244‑M2/39‑50 (MQ=255) aactttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAg < 1:1278034‑M2/12‑1 (MQ=255) aactttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAg > 1:1178383‑M2/39‑50 (MQ=255) ctttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCt < 1:2760391‑M2/14‑1 (MQ=255) ttatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTc > 1:2735873‑M2/35‑50 (MQ=255) tatctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTc < 1:787832‑M2/16‑1 (MQ=255) atctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTcc < 1:1927305‑M2/17‑1 (MQ=255) atctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTcc < 1:1229264‑M2/17‑1 (MQ=255) tctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCg < 1:3141643‑M2/18‑1 (MQ=255) ctggttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGAt > 1:2639035‑M2/31‑50 (MQ=255) gttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGa < 1:1427135‑M2/19‑1 (MQ=255) gttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGAt < 1:173317‑M2/20‑1 (MQ=255) gttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATg < 1:197224‑M2/21‑1 (MQ=255) gttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATg < 1:491739‑M2/21‑1 (MQ=255) ttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGc < 1:1361976‑M2/24‑1 (MQ=255) ttttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGc < 1:4254890‑M2/24‑1 (MQ=255) ttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGt > 1:1438750‑M2/25‑50 (MQ=255) ttctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGt > 1:2789660‑M2/25‑50 (MQ=255) tctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGtt > 1:940977‑M2/24‑50 (MQ=255) tctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGtt > 1:3245663‑M2/24‑50 (MQ=255) tctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGtt > 1:1606733‑M2/24‑50 (MQ=255) tctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGtt > 1:873358‑M2/24‑50 (MQ=255) tctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGt < 1:1346286‑M2/26‑1 (MQ=255) tctcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGt < 1:2104931‑M2/26‑1 (MQ=255) tcgtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTta > 1:4229186‑M2/22‑50 (MQ=255) gtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGttt < 1:2090974‑M2/28‑1 (MQ=255) gtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTta < 1:1906003‑M2/29‑1 (MQ=255) gtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTta < 1:3881785‑M2/29‑1 (MQ=255) gtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTta < 1:1693547‑M2/29‑1 (MQ=255) gtttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTta < 1:3151264‑M2/29‑1 (MQ=255) tttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTatat < 1:1353101‑M2/32‑1 (MQ=255) tttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTatat < 1:802449‑M2/32‑1 (MQ=255) tttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTatat < 1:4305468‑M2/32‑1 (MQ=255) ttcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATg > 1:2459332‑M2/18‑50 (MQ=255) tcactaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATg < 1:869648‑M2/33‑1 (MQ=255) actaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTc > 1:1361512‑M2/15‑49 (MQ=255) actaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTc > 1:626777‑M2/15‑49 (MQ=255) actaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTc > 1:2618830‑M2/15‑49 (MQ=255) ctaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCaa > 1:1470407‑M2/14‑50 (MQ=255) ctaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCaa < 1:4119097‑M2/37‑1 (MQ=255) ctaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCaa < 1:1486133‑M2/37‑1 (MQ=255) ctaaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCaa < 1:442745‑M2/37‑1 (MQ=255) taaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCaa > 1:2678744‑M2/13‑49 (MQ=255) taaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCaa > 1:2660089‑M2/13‑49 (MQ=255) aaccgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAAt > 1:2991549‑M2/12‑49 (MQ=255) accgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAAt < 1:985956‑M2/38‑1 (MQ=255) accgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAAt < 1:4008361‑M2/38‑1 (MQ=255) accgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATaa < 1:3805724‑M2/40‑1 (MQ=255) cgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAg > 1:2817448‑M2/9‑49 (MQ=255) cgaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAg > 1:1945967‑M2/9‑49 (MQ=255) gaaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAg > 1:1849272‑M2/8‑48 (MQ=255) aaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAg > 1:3246757‑M2/7‑47 (MQ=255) aaggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAg > 1:1953574‑M2/7‑47 (MQ=255) aggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGa < 1:4175225‑M2/45‑1 (MQ=255) aggagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGa < 1:2995515‑M2/45‑1 (MQ=255) gagATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAAc < 1:3399624‑M2/47‑1 (MQ=255) agATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACa < 1:452541‑M2/48‑1 (MQ=255) agATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACa < 1:1931957‑M2/48‑1 (MQ=255) gATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACa > 1:4162328‑M2/2‑49 (MQ=255) gATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACa > 1:1552347‑M2/2‑49 (MQ=255) gATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACa > 1:273292‑M2/2‑49 (MQ=255) atgCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACaaa < 1:849569/50‑1 (MQ=255) | GCTTCTCTTCCGGTATTTACGCGATGAAAGAAAACGATACGTTACATGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACAAA > NC_000913/1873419‑1873516 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |