Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	687,860	Δ1,185 bp	IS5‑mediated	insH‑3	insH‑3

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	687860	689044	1185	78 [0]	[0] 76	insH‑3	insH‑3

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 687859	0 (0.000)	72 (1.270)	54/96	0.0	100%	noncoding (1187/1195 nt)	IS5	repeat region
	?	NC_000913	689045 =	0 (0.000)					noncoding (1/1195 nt)	IS5	repeat region

TTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC  >  NC_000913/687810‑687908                                                  |                                                  ttATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC                                                   <  1:1228045‑M1/50‑1 (MQ=255) ttATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC                                                   >  1:1949976‑M1/1‑50 (MQ=255) ttATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC                                                   <  1:454308‑M1/50‑1 (MQ=255)  tATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCc                                                  >  1:3196168‑M1/1‑49 (MQ=255)  tATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCc                                                  >  1:354303‑M1/1‑49 (MQ=255)   aTCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCc                                                  <  1:3114722‑M1/49‑2 (MQ=255)    tCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCct                                                 <  1:2184506‑M1/49‑3 (MQ=255)    tCGTCTGCAAATTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCctt                                                <  1:798930‑M1/50‑4 (MQ=255)     cGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCct                                                 >  1:225339‑M1/1‑46 (MQ=255)     cGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCct                                                 >  1:2059368‑M1/1‑46 (MQ=255)      gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttag                                              <  1:2335605‑M1/50‑6 (MQ=255)      gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttag                                              >  1:3433592‑M1/1‑45 (MQ=255)      gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttag                                              >  1:701731‑M1/1‑45 (MQ=255)      gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCctta                                               <  1:70258‑M1/49‑5 (MQ=255)       tCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttagg                                             >  1:1928149‑M1/1‑44 (MQ=255)           cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaa                                          <  1:199114‑M1/49‑10 (MQ=255)           cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaa                                          >  1:1041755‑M1/1‑40 (MQ=255)            aaCTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaaca                                        <  1:3587218‑M1/50‑12 (MQ=255)            aaCTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaaca                                        <  1:1566542‑M1/50‑12 (MQ=255)             aCTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacat                                       >  1:574480‑M1/1‑38 (MQ=255)              cTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatt                                      >  1:3151070‑M1/1‑37 (MQ=255)               tttATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatt                                      >  1:1955618‑M1/1‑36 (MQ=255)               tttATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatt                                      >  1:1308729‑M1/1‑36 (MQ=255)                ttATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatt                                      >  1:3608643‑M1/1‑35 (MQ=255)                 tATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacattta                                    <  1:923036‑M1/49‑16 (MQ=255)                 tATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacattt                                     <  1:3285766‑M1/48‑15 (MQ=255)                  aTTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagt                                  >  1:2420375‑M1/1‑33 (MQ=255)                  aTTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttag                                   <  1:167073‑M1/49‑17 (MQ=255)                   ttGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtt                                 >  1:1371200‑M1/1‑32 (MQ=255)                    tgtgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagttt                                >  1:1830029‑M1/1‑31 (MQ=255)                    tgtgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagttt                                >  1:1490272‑M1/1‑31 (MQ=255)                     gtgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagttt                                <  1:4152913‑M1/49‑20 (MQ=255)                      tgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttgg                              <  1:3913787‑M1/50‑22 (MQ=255)                      tgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttgg                              <  1:1504553‑M1/50‑22 (MQ=255)                      tgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttg                               <  1:608449‑M1/49‑21 (MQ=255)                      agcAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttgg                              >  1:2345458‑M1/2‑29 (MQ=255)                       gCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggc                             >  1:2448931‑M1/1‑28 (MQ=255)                        cAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggc                             <  1:827930‑M1/49‑23 (MQ=255)                        cAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggc                             >  1:4024135‑M1/1‑27 (MQ=255)                         aGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggct                            >  1:3660688‑M1/1‑26 (MQ=255)                          gtgtTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaa                          <  1:2509215‑M1/50‑26 (MQ=255)                          gtgtTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaa                          <  1:1158380‑M1/50‑26 (MQ=255)                           tgttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaa                         <  1:261815‑M1/50‑27 (MQ=255)                           tgttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaa                         <  1:855065‑M1/50‑27 (MQ=255)                            gttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaat                        >  1:2580072‑M1/1‑23 (MQ=255)                            gttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaat                        >  1:2458808‑M1/1‑23 (MQ=255)                             ttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatg                       >  1:2369600‑M1/1‑22 (MQ=255)                             ttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatg                       <  1:2121505‑M1/50‑29 (MQ=255)                              tgtgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatg                       >  1:489481‑M1/1‑21 (MQ=255)                                tgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaa                    <  1:3796854‑M1/50‑32 (MQ=255)                                tgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgta                     >  1:2563507‑M1/1‑19 (MQ=255)                                  ccTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaa                   <  1:3640838‑M1/49‑33 (MQ=255)                                   cTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgta                     >  1:1921348‑M1/1‑16 (MQ=255)                                    tGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaaga                 >  1:4352581‑M1/1‑15 (MQ=255)                                    tGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaaga                 >  1:4313236‑M1/1‑15 (MQ=255)                                      ttAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatat              >  1:3833797‑M1/1‑13 (MQ=255)                                       tAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatatt             >  1:1849157‑M1/1‑12 (MQ=255)                                        aGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattg            >  1:3567603‑M1/1‑11 (MQ=255)                                         gggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgc           >  1:3568832‑M1/1‑10 (MQ=255)                                         gggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgc           >  1:4304387‑M1/1‑10 (MQ=255)                                         gggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgc           <  1:4212333‑M1/50‑41 (MQ=255)                                         gggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattg            <  1:241714‑M1/49‑40 (MQ=255)                                         gggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattg            <  1:1640911‑M1/49‑40 (MQ=255)                                          ggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgct          <  1:4031011‑M1/50‑42 (MQ=255)                                          ggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgct          >  1:316386‑M1/1‑9 (MQ=255)                                          ggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgct          <  1:3811528‑M1/50‑42 (MQ=255)                                          ggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgct          <  1:2805843‑M1/50‑42 (MQ=255)                                           gAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctg         >  1:369855‑M1/1‑8 (MQ=255)                                           gAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctg         <  1:2467724‑M1/50‑43 (MQ=255)                                            aaGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgt        >  1:2060237‑M1/1‑7 (MQ=255)                                            aaGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgt        >  1:368507‑M1/1‑7 (MQ=255)                                             aGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgtt       <  1:312922‑M1/50‑45 (MQ=255)                                              ggTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgttt      <  1:1672177‑M1/50‑46 (MQ=255)                                              ggTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgttt      <  1:2538731‑M1/50‑46 (MQ=255)                                               gTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgtttt     <  1:2073863‑M1/50‑47 (MQ=255)                                                  ccttaggtaacatttagtttggctaaatgtaaagatattgctgttttatt  >  1:2980271‑M1/1‑1 (MQ=255)                                                  ccttaggtaacatttagtttggctaaatgtaaagatattgctgttttatt  >  1:3441041‑M1/1‑1 (MQ=255)                                                  ccttaggtaacatttagtttggctaaatgtaaagatattgctgttttat   <  1:4154713‑M1/49‑49 (MQ=255)                                                  |                                                  TTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC  >  NC_000913/687810‑687908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑