BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	687,860	Δ1,185 bp	IS5‑mediated	insH‑3	insH‑3

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	687860	689044	1185	78 [0]	[0] 76	insH‑3	insH‑3

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 687859	0 (0.000)	72 (1.270)	54/96	0.0	100%	noncoding (1187/1195 nt)	IS5	repeat region
*	?	NC_000913	689045 =	0 (0.000)	72 (1.270)	54/96	0.0	100%	noncoding (1/1195 nt)	IS5	repeat region

GCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATTG  >  NC_000913/688996‑689094

tatcgtctgcaactttattgtgcagtgttgtgcctgttagggaaggtgcc                                                   >  1:3196168‑M2/50‑50 (MQ=255)

tatcgtctgcaactttattgtgcagtgttgtgcctgttagggaaggtgcc                                                   >  1:354303‑M2/50‑50 (MQ=255)

 atcgtctgcaactttattgtgcagtgttgtgcctgttagggaaggtgcc                                                   <  1:3114722‑M2/1‑1 (MQ=255)

  tcgtctgcaactttattgtgcagtgttgtgcctgttagggaaggtgcCt                                                  <  1:2184506‑M2/2‑1 (MQ=255)

  tcgtctgcaaatttattgtgcagtgttgtgcctgttagggaaggtgcCtt                                                 <  1:798930‑M2/3‑1 (MQ=255)

   cgtctgcaactttattgtgcagtgttgtgcctgttagggaaggtgcCt                                                  >  1:225339‑M2/47‑48 (MQ=255)

   cgtctgcaactttattgtgcagtgttgtgcctgttagggaaggtgcCt                                                  >  1:2059368‑M2/47‑48 (MQ=255)

    gtctgcaactttattgtgcagtgttgtgcctgttagggaaggtgcCTTa                                                <  1:70258‑M2/4‑1 (MQ=255)

    gtctgcaactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAg                                               >  1:3433592‑M2/46‑50 (MQ=255)

    gtctgcaactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAg                                               <  1:2335605‑M2/5‑1 (MQ=255)

    gtctgcaactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAg                                               >  1:701731‑M2/46‑50 (MQ=255)

     tctgcaactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAgg                                              >  1:1928149‑M2/45‑50 (MQ=255)

         caactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTaa                                           >  1:1041755‑M2/41‑49 (MQ=255)

         caactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTaa                                           <  1:199114‑M2/9‑1 (MQ=255)

          aactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACa                                         <  1:1566542‑M2/11‑1 (MQ=255)

          aactttattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACa                                         <  1:3587218‑M2/11‑1 (MQ=255)

           actttattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACAt                                        >  1:574480‑M2/39‑50 (MQ=255)

            ctttattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACAtt                                       >  1:3151070‑M2/38‑50 (MQ=255)

             tttattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACAtt                                       >  1:1955618‑M2/37‑49 (MQ=255)

             tttattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACAtt                                       >  1:1308729‑M2/37‑49 (MQ=255)

              ttattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACAtt                                       >  1:3608643‑M2/36‑48 (MQ=255)

               tattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACAttt                                      <  1:3285766‑M2/14‑1 (MQ=255)

               tattgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTa                                     <  1:923036‑M2/15‑1 (MQ=255)

                attgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAg                                    <  1:167073‑M2/16‑1 (MQ=255)

                attgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGt                                   >  1:2420375‑M2/34‑50 (MQ=255)

                 ttgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGtt                                  >  1:1371200‑M2/33‑50 (MQ=255)

                  tgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGttt                                 >  1:1830029‑M2/32‑50 (MQ=255)

                  tgtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGttt                                 >  1:1490272‑M2/32‑50 (MQ=255)

                   gtgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGttt                                 <  1:4152913‑M2/19‑1 (MQ=255)

                    tgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTgg                               <  1:3913787‑M2/21‑1 (MQ=255)

                    tgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTgg                               <  1:1504553‑M2/21‑1 (MQ=255)

                    tgcagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTg                                <  1:608449‑M2/20‑1 (MQ=255)

                    agcagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTgg                               >  1:2345458‑M2/30‑50 (MQ=255)

                     gcagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGc                              >  1:2448931‑M2/29‑50 (MQ=255)

                      cagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGc                              >  1:4024135‑M2/28‑49 (MQ=255)

                      cagtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGc                              <  1:827930‑M2/22‑1 (MQ=255)

                       agtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCt                             >  1:3660688‑M2/27‑49 (MQ=255)

                        gtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTaa                           <  1:1158380‑M2/25‑1 (MQ=255)

                        gtgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTaa                           <  1:2509215‑M2/25‑1 (MQ=255)

                         tgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTaaa                          <  1:855065‑M2/26‑1 (MQ=255)

                         tgttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTaaa                          <  1:261815‑M2/26‑1 (MQ=255)

                          gttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAAt                         >  1:2458808‑M2/24‑50 (MQ=255)

                          gttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAAt                         >  1:2580072‑M2/24‑50 (MQ=255)

                           ttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATg                        >  1:2369600‑M2/23‑50 (MQ=255)

                           ttgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATg                        <  1:2121505‑M2/28‑1 (MQ=255)

                            tgtgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATg                        >  1:489481‑M2/22‑49 (MQ=255)

                              tgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTaa                     <  1:3796854‑M2/31‑1 (MQ=255)

                              tgcctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTa                      >  1:2563507‑M2/20‑49 (MQ=255)

                                cctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTaaa                    <  1:3640838‑M2/32‑1 (MQ=255)

                                 ctgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTa                      >  1:1921348‑M2/17‑46 (MQ=255)

                                  tgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGa                  >  1:4352581‑M2/16‑49 (MQ=255)

                                  tgttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGa                  >  1:4313236‑M2/16‑49 (MQ=255)

                                    ttagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGatat               >  1:3833797‑M2/14‑50 (MQ=255)

                                     tagggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATAtt              >  1:1849157‑M2/13‑50 (MQ=255)

                                      agggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTg             >  1:3567603‑M2/12‑50 (MQ=255)

                                       gggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTg             <  1:1640911‑M2/39‑1 (MQ=255)

                                       gggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTg             <  1:241714‑M2/39‑1 (MQ=255)

                                       gggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGc            <  1:4212333‑M2/40‑1 (MQ=255)

                                       gggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGc            >  1:4304387‑M2/11‑50 (MQ=255)

                                       gggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGc            >  1:3568832‑M2/11‑50 (MQ=255)

                                        ggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCt           <  1:3811528‑M2/41‑1 (MQ=255)

                                        ggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCt           <  1:4031011‑M2/41‑1 (MQ=255)

                                        ggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCt           >  1:316386‑M2/10‑50 (MQ=255)

                                        ggaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCt           <  1:2805843‑M2/41‑1 (MQ=255)

                                         gaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTg          >  1:369855‑M2/9‑50 (MQ=255)

                                         gaaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTg          <  1:2467724‑M2/42‑1 (MQ=255)

                                          aaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGt         >  1:368507‑M2/8‑50 (MQ=255)

                                          aaggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGt         >  1:2060237‑M2/8‑50 (MQ=255)

                                           aggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGtt        <  1:312922‑M2/44‑1 (MQ=255)

                                            ggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGttt       <  1:2538731‑M2/45‑1 (MQ=255)

                                            ggtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGttt       <  1:1672177‑M2/45‑1 (MQ=255)

                                             gtgcCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGtttt      <  1:2073863‑M2/46‑1 (MQ=255)

                                                cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTAtt   >  1:3441041‑M2/2‑50 (MQ=255)

                                                cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTAtt   >  1:2980271‑M2/2‑50 (MQ=255)

                                                cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTAt    <  1:4154713‑M2/48‑1 (MQ=255)

                                                 cttAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTAttg  >  1:369174/1‑50 (MQ=255)

GCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATTG  >  NC_000913/688996‑689094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`