| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 76 [0] | [0] 75 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 74 (1.280) | 51/98 | 0.0 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
ATGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGATGAAAAAAAGTGTATTGACGGCGTTTATAACTGTGGTATGTGCAACGT > NC_000913/997818‑997916 | aTGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACg > 1:3054320/1‑50 (MQ=255)aTGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACg > 1:4151924/1‑50 (MQ=255) tGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGt > 1:510656‑M1/1‑49 (MQ=255) gTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtt > 1:3118066‑M1/1‑48 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGttt > 1:1342282‑M1/1‑47 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGttt < 1:4060932‑M1/50‑4 (MQ=255) tCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGttt > 1:4173761‑M1/1‑47 (MQ=255) cATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttg > 1:3166274‑M1/1‑46 (MQ=255) cATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttg > 1:2202796‑M1/1‑46 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgc < 1:2867070‑M1/50‑6 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgc > 1:3257370‑M1/1‑45 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgc > 1:2859657‑M1/1‑45 (MQ=255) aTTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttg < 1:4307527‑M1/49‑5 (MQ=255) tttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgcc < 1:1535420‑M1/50‑7 (MQ=255) tttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgcc > 1:2730389‑M1/1‑44 (MQ=255) tttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgcc < 1:532355‑M1/50‑7 (MQ=255) ttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 1:4467‑M1/1‑43 (MQ=255) ttAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 1:3441386‑M1/1‑43 (MQ=255) tAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccg > 1:291069‑M1/1‑42 (MQ=255) aaaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgc < 1:203417‑M1/49‑9 (MQ=255) aaGGCATTATCATATTTACGAAGTGATCAGGATGATAACGtttgccgcag > 1:2738860‑M1/1‑40 (MQ=255) aaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcag > 1:2436009‑M1/1‑40 (MQ=255) aaGGCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcag < 1:2425951‑M1/50‑11 (MQ=255) ggCATTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggt < 1:2245557‑M1/50‑13 (MQ=255) aTTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaa > 1:878142‑M1/1‑35 (MQ=255) aTTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaa < 1:3548059‑M1/50‑16 (MQ=255) aTTATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaa > 1:2351091‑M1/1‑35 (MQ=255) ttATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaat > 1:2054797‑M1/1‑34 (MQ=255) tATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaatt > 1:1050073‑M1/1‑33 (MQ=255) tATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaatt > 1:2216408‑M1/1‑33 (MQ=255) tATCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaatt > 1:1811351‑M1/1‑33 (MQ=255) aTCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattc > 1:2385486‑M1/1‑32 (MQ=255) tCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcc < 1:2433255‑M1/50‑20 (MQ=255) tCATATTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcc < 1:3973601‑M1/50‑20 (MQ=255) atatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccct < 1:2166063‑M1/50‑22 (MQ=255) atatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccc < 1:1440264‑M1/49‑21 (MQ=255) tatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctt < 1:3982161‑M1/50‑23 (MQ=255) tatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctt > 1:2114995‑M1/1‑28 (MQ=255) tatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctt > 1:511888‑M1/1‑28 (MQ=255) tatTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctt > 1:2876428‑M1/1‑28 (MQ=255) atTTACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttt > 1:950998‑M1/1‑27 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctttt < 1:837535‑M1/50‑25 (MQ=255) tttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattccctttt > 1:3614791‑M1/1‑26 (MQ=255) ttACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttg > 1:1720824‑M1/1‑25 (MQ=255) tACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttgg > 1:1210084‑M1/1‑24 (MQ=255) tACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttg < 1:492634‑M1/49‑26 (MQ=255) tACGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttg < 1:2006352‑M1/49‑26 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtc < 1:2008564‑M1/50‑29 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggt < 1:2763898‑M1/49‑28 (MQ=255) cGAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggt < 1:1164306‑M1/49‑28 (MQ=255) gAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtcc > 1:1353383‑M1/1‑21 (MQ=255) gAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtcc > 1:3275062‑M1/1‑21 (MQ=255) gAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtcc > 1:3213790‑M1/1‑21 (MQ=255) gAAGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtcc < 1:2031091‑M1/50‑30 (MQ=255) aaGAGATCAGGATGATAACGtttgccgcaggtcaattcccttttggtcc > 1:2466033‑M1/1‑20 (MQ=255) agagATCAGGATGATAACGtttgccgcaggtcaattcccttttggtccga < 1:1815450‑M1/50‑32 (MQ=255) agagATCAGGATGATAACGtttgccgcaggtcaattcccttttggtccga < 1:2207665‑M1/50‑32 (MQ=255) gagaTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaa < 1:4341515‑M1/50‑33 (MQ=255) aTCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactc > 1:3232286‑M1/1‑15 (MQ=255) tCAGGATGATAACGtttgccgcaggtcaattcccttttggtccgaactcg < 1:2458005‑M1/50‑37 (MQ=255) ggATGATAACGtttgccgcaggtcaattcccttttggtccgaactcgcac < 1:2869620‑M1/50‑40 (MQ=255) atgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcacat < 1:1393533‑M1/50‑42 (MQ=255) atgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcaca > 1:4148958‑M1/1‑9 (MQ=255) atgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcaca > 1:4351814‑M1/1‑9 (MQ=255) tgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcacat > 1:2703331‑M1/1‑8 (MQ=255) tgatAACGtttgccgcaggtcaattcccttttggtccgaactcgcacat > 1:2323302‑M1/1‑8 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataat < 1:3806181‑M1/50‑45 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataa < 1:3784750‑M1/49‑44 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataa > 1:1233405‑M1/1‑6 (MQ=255) atAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataa > 1:750452‑M1/1‑6 (MQ=255) tAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataata > 1:2147601‑M1/1‑5 (MQ=255) tAACGtttgccgcaggtcaattcccttttggtccgaactcgcacataata > 1:2215580‑M1/1‑5 (MQ=255) aCGtttgccgcaggtcaattcccttttggtccgaactcgcacataatacg < 1:3892562‑M1/50‑48 (MQ=255) aCGtttgccgcaggtcaattcccttttggtccgaactcgcacataatacg < 1:2661073‑M1/50‑48 (MQ=255) gtttgccgcaggtcaattcccttttggtccgaactcgcacataatacgcc > 1:3737796‑M1/1‑1 (MQ=255) gtttgccgcaggtcaattcccttttggtccgaactcgcacataatacgcc > 1:841203‑M1/1‑1 (MQ=255) | ATGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGATGAAAAAAAGTGTATTGACGGCGTTTATAACTGTGGTATGTGCAACGT > NC_000913/997818‑997916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |