| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 76 [0] | [0] 75 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 74 (1.280) | 51/98 | 0.0 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
AAGGAGCAAAATCTGCCCTGAAACAGGTTCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCC > NC_000913/1004637‑1004735 | tgtcatttaaaggcattatcatatttacgaagagatcaggatgataacgt > 1:510656‑M2/50‑50 (MQ=255) gtcatttaaaggcattatcatatttacgaagagatcaggatgataacgtt > 1:3118066‑M2/49‑50 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgttt < 1:4060932‑M2/3‑1 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgttt > 1:1342282‑M2/48‑50 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgttt > 1:4173761‑M2/48‑50 (MQ=255) catttaaaggcattatcatatttacgaagagatcaggatgataacgTTTg > 1:3166274‑M2/47‑50 (MQ=255) catttaaaggcattatcatatttacgaagagatcaggatgataacgTTTg > 1:2202796‑M2/47‑50 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTg < 1:4307527‑M2/4‑1 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGc < 1:2867070‑M2/5‑1 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGc > 1:3257370‑M2/46‑50 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGc > 1:2859657‑M2/46‑50 (MQ=255) tttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGcc < 1:1535420‑M2/6‑1 (MQ=255) tttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGcc < 1:532355‑M2/6‑1 (MQ=255) tttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGcc > 1:2730389‑M2/45‑50 (MQ=255) ttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 1:4467‑M2/44‑50 (MQ=255) ttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 1:3441386‑M2/44‑50 (MQ=255) taaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 1:291069‑M2/43‑49 (MQ=255) aaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCGc < 1:203417‑M2/8‑1 (MQ=255) aaggcattatcatatttacgaagtgatcaggatgataacgTTTGCCGCAg > 1:2738860‑M2/41‑50 (MQ=255) aaggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAg > 1:2436009‑M2/41‑50 (MQ=255) aaggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAg < 1:2425951‑M2/10‑1 (MQ=255) ggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGt < 1:2245557‑M2/12‑1 (MQ=255) attatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCaa > 1:878142‑M2/36‑50 (MQ=255) attatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCaa > 1:2351091‑M2/36‑50 (MQ=255) attatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCaa < 1:3548059‑M2/15‑1 (MQ=255) ttatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAt > 1:2054797‑M2/35‑50 (MQ=255) tatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAtt > 1:1050073‑M2/34‑50 (MQ=255) tatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAtt > 1:2216408‑M2/34‑50 (MQ=255) tatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAtt > 1:1811351‑M2/34‑50 (MQ=255) atcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTc > 1:2385486‑M2/33‑50 (MQ=255) tcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTcc < 1:2433255‑M2/19‑1 (MQ=255) tcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTcc < 1:3973601‑M2/19‑1 (MQ=255) atatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTccc < 1:1440264‑M2/20‑1 (MQ=255) atatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCt < 1:2166063‑M2/21‑1 (MQ=255) tatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtt > 1:2114995‑M2/29‑50 (MQ=255) tatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtt < 1:3982161‑M2/22‑1 (MQ=255) tatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtt > 1:2876428‑M2/29‑50 (MQ=255) tatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtt > 1:511888‑M2/29‑50 (MQ=255) atttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCttt > 1:950998‑M2/28‑50 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtttt < 1:837535‑M2/24‑1 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtttt > 1:3614791‑M2/27‑50 (MQ=255) ttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTg > 1:1720824‑M2/26‑50 (MQ=255) tacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTgg > 1:1210084‑M2/25‑50 (MQ=255) tacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTg < 1:2006352‑M2/25‑1 (MQ=255) tacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTg < 1:492634‑M2/25‑1 (MQ=255) cgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGt < 1:2763898‑M2/27‑1 (MQ=255) cgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGt < 1:1164306‑M2/27‑1 (MQ=255) cgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTc < 1:2008564‑M2/28‑1 (MQ=255) gaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 1:3213790‑M2/22‑50 (MQ=255) gaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc < 1:2031091‑M2/29‑1 (MQ=255) gaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 1:3275062‑M2/22‑50 (MQ=255) gaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 1:1353383‑M2/22‑50 (MQ=255) aagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 1:2466033‑M2/21‑49 (MQ=255) agagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGa < 1:1815450‑M2/31‑1 (MQ=255) agagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGa < 1:2207665‑M2/31‑1 (MQ=255) gagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGaa < 1:4341515‑M2/32‑1 (MQ=255) atcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTc > 1:3232286‑M2/16‑50 (MQ=255) tcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCg < 1:2458005‑M2/36‑1 (MQ=255) ggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGcac < 1:2869620‑M2/39‑1 (MQ=255) atgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGcaca > 1:4351814‑M2/10‑49 (MQ=255) atgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGcaca > 1:4148958‑M2/10‑49 (MQ=255) atgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACat < 1:1393533‑M2/41‑1 (MQ=255) tgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACat > 1:2703331‑M2/9‑49 (MQ=255) tgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACat > 1:2323302‑M2/9‑49 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataat < 1:3806181‑M2/44‑1 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataa < 1:3784750‑M2/43‑1 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataa > 1:1233405‑M2/7‑49 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataa > 1:750452‑M2/7‑49 (MQ=255) taacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataata > 1:2147601‑M2/6‑50 (MQ=255) taacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataata > 1:2215580‑M2/6‑50 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACg < 1:3892562‑M2/47‑1 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACg < 1:2661073‑M2/47‑1 (MQ=255) gTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGcc > 1:3737796‑M2/2‑50 (MQ=255) gTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGcc > 1:841203‑M2/2‑50 (MQ=255) tttGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGccc > 1:2269797/1‑50 (MQ=255) | AAGGAGCAAAATCTGCCCTGAAACAGGTTCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCC > NC_000913/1004637‑1004735 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |