| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 90 [0] | [0] 91 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 87 (1.140) | 52/94 | 0.0 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/263463‑263513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > NC_000913/325411‑325458 TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGA > 1:4130144/1‑50 TTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATA < 1:2870708/49‑1 TCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGT > 1:4657333/1‑50 TACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCT > 1:4288257/1‑50 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCT < 1:2889157/48‑1 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTC < 1:4224887/47‑1 CAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTA < 1:1560982/50‑1 AGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT < 1:2929914/50‑1 AGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT < 1:4301000/50‑1 AGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT > 1:3143201/1‑50 GAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATC < 1:3646586/50‑1 GAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATC < 1:3027221/50‑1 GAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATC < 1:554053/50‑1 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCA < 1:3282961/50‑1 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT > 1:5684463/1‑48 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT > 1:3454495/1‑48 AAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAG < 1:1202512/50‑1 AATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGG < 1:3575319/50‑1 ATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGA < 1:4962126/50‑1 ATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGA < 1:695681/50‑1 ATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGG > 1:224054/1‑49 ATTCACGGCATCGGCTAGGGTGATACCAGCATCGATAGTCTGTATCAGGA < 1:5207272/50‑1 ACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGT < 1:2560628/50‑1 GGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTC > 1:618811/1‑50 GCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCG > 1:4245037/1‑50 CATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGG > 1:3315/1‑50 CATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGG < 1:4925952/50‑1 CATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGG > 1:3025778/1‑50 CATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGG > 1:5271800/1‑50 CATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGG < 1:5867819/50‑1 CATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGG < 1:1486395/50‑1 ATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGG < 1:3033226/50‑1 ATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGG > 1:456814/1‑50 ATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGG > 1:5662481/1‑50 ATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGG > 1:646971/1‑50 TCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGT < 1:143410/50‑1 TCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGT < 1:2519342/50‑1 CGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGT > 1:526776/1‑49 CGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGT > 1:5569607/1‑49 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTA < 1:2046257/50‑1 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT > 1:3864157/1‑49 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT < 1:4157118/49‑1 GCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTA > 1:4054264/1‑49 TAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAA > 1:3775041/1‑49 AGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATA > 1:992085/1‑50 AGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATA > 1:3923235/1‑50 AGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATA > 1:934774/1‑50 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT < 1:1191281/50‑1 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT < 1:1082453/50‑1 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT > 1:1331674/1‑50 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT < 1:2506129/50‑1 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT < 1:2600142/50‑1 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT < 1:2928222/50‑1 GGGTGAGACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAAT < 1:5300567/48‑1 GGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATC < 1:5581650/50‑1 GGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATC < 1:4490820/50‑1 GGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATC < 1:4619675/50‑1 GTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCA < 1:2752123/50‑1 GTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCA < 1:4388736/50‑1 GTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCA < 1:3227384/50‑1 TGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG < 1:3141036/50‑1 TGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG < 1:1726200/50‑1 GATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG > 1:516208/1‑49 ATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCA < 1:660247/50‑1 ATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCA < 1:2551493/50‑1 ATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC > 1:2640412/1‑49 ACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAA > 1:6046113/1‑49 ACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAA > 1:4904730/1‑49 CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAA < 1:634197/50‑1 CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAA < 1:1926377/49‑1 CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAA > 1:4645534/1‑49 CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAA > 1:944386/1‑49 CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAA < 1:2535576/49‑1 CGGCATCGATAGTCTGTATCGGGAATGTTCGGGTTAAATATCAGCAAAAA < 1:5656073/50‑1 CGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAA < 1:5560523/50‑1 GGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAG > 1:1477259/1‑50 GGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAG > 1:2021085/1‑50 GCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGC > 1:5765347/1‑50 CATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCC > 1:3065917/1‑50 acCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC > 1:3622634/3‑50 ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC > 1:644298/1‑50 ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC > 1:3355477/1‑50 ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC < 1:341467/50‑1 ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC > 1:998259/1‑50 TCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCG < 1:4872258/50‑1 TCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCG > 1:4714000/1‑50 TCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCG < 1:1306442/50‑1 CGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCG > 1:4131190/1‑49 ATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > 1:5409199/1‑50 TAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > 1:2403766/1‑49 TAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > 1:2819821/1‑49 TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/263463‑263513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > NC_000913/325411‑325458 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |