| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 90 [0] | [0] 91 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 87 (1.140) | 52/94 | 0.0 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
TTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATGTGTTCCTTAATCACAGCCTCATTGCAGAATGGCGTGTCGTTTATTGT > NC_000913/263466‑263561 | ttCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATa < 1:2870708‑M1/49‑2 (MQ=255) tCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagt > 1:4657333‑M1/1‑47 (MQ=255) tACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtct > 1:4288257‑M1/1‑45 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtct < 1:2889157‑M1/48‑6 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtc < 1:4224887‑M1/47‑5 (MQ=255) cAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgta < 1:1560982‑M1/50‑9 (MQ=255) aGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat < 1:2929914‑M1/50‑10 (MQ=255) aGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat > 1:3143201‑M1/1‑41 (MQ=255) aGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat < 1:4301000‑M1/50‑10 (MQ=255) gAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatc < 1:554053‑M1/50‑11 (MQ=255) gAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatc < 1:3027221‑M1/50‑11 (MQ=255) gAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatc < 1:3646586‑M1/50‑11 (MQ=255) aaaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatca < 1:3282961‑M1/50‑12 (MQ=255) aaaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat > 1:5684463‑M1/1‑39 (MQ=255) aaaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat > 1:3454495‑M1/1‑39 (MQ=255) aaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcag < 1:1202512‑M1/50‑13 (MQ=255) aaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagg < 1:3575319‑M1/50‑14 (MQ=255) aTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagga < 1:695681‑M1/50‑15 (MQ=255) aTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagga < 1:4962126‑M1/50‑15 (MQ=255) aTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagg > 1:224054‑M1/1‑36 (MQ=255) aTTCACGGCATCGGCTAGGGTGATACCAGCATCGATagtctgtatcagga < 1:5207272‑M1/50‑15 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgt < 1:2560628‑M1/50‑19 (MQ=255) ggCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttc > 1:618811‑M1/1‑30 (MQ=255) gCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcg > 1:4245037‑M1/1‑29 (MQ=255) cATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgg > 1:5271800‑M1/1‑28 (MQ=255) cATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgg > 1:3315‑M1/1‑28 (MQ=255) cATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgg < 1:1486395‑M1/50‑23 (MQ=255) cATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgg < 1:5867819‑M1/50‑23 (MQ=255) cATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgg > 1:3025778‑M1/1‑28 (MQ=255) cATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgg < 1:4925952‑M1/50‑23 (MQ=255) aTCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcggg < 1:3033226‑M1/50‑24 (MQ=255) aTCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcggg > 1:456814‑M1/1‑27 (MQ=255) aTCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcggg > 1:5662481‑M1/1‑27 (MQ=255) aTCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcggg > 1:646971‑M1/1‑27 (MQ=255) tCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggt < 1:143410‑M1/50‑25 (MQ=255) tCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggt < 1:2519342‑M1/50‑25 (MQ=255) cGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggt > 1:5569607‑M1/1‑25 (MQ=255) cGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggt > 1:526776‑M1/1‑25 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtta < 1:2046257‑M1/50‑27 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtt < 1:4157118‑M1/49‑26 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtt > 1:3864157‑M1/1‑24 (MQ=255) gCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtta > 1:4054264‑M1/1‑23 (MQ=255) tAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaa > 1:3775041‑M1/1‑21 (MQ=255) aGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaata > 1:934774‑M1/1‑20 (MQ=255) aGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaata > 1:992085‑M1/1‑20 (MQ=255) aGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaata > 1:3923235‑M1/1‑20 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat < 1:1191281‑M1/50‑32 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat < 1:1082453‑M1/50‑32 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat > 1:1331674‑M1/1‑19 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat < 1:2506129‑M1/50‑32 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat < 1:2600142‑M1/50‑32 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat < 1:2928222‑M1/50‑32 (MQ=255) gggTGAGACCGGCATCGATagtctgtatcaggaatgttcgggttaaat < 1:5300567‑M1/48‑30 (MQ=255) ggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatc < 1:5581650‑M1/50‑33 (MQ=255) ggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatc < 1:4490820‑M1/50‑33 (MQ=255) ggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatc < 1:4619675‑M1/50‑33 (MQ=255) gTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatca < 1:2752123‑M1/50‑34 (MQ=255) gTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatca < 1:4388736‑M1/50‑34 (MQ=255) gTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatca < 1:3227384‑M1/50‑34 (MQ=255) tGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag < 1:3141036‑M1/50‑35 (MQ=255) tGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag < 1:1726200‑M1/50‑35 (MQ=255) gATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag > 1:516208‑M1/1‑15 (MQ=255) aTACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagca < 1:660247‑M1/50‑37 (MQ=255) aTACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagca < 1:2551493‑M1/50‑37 (MQ=255) aTACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagc > 1:2640412‑M1/1‑14 (MQ=255) aCCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaa > 1:6046113‑M1/1‑12 (MQ=255) aCCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaa > 1:4904730‑M1/1‑12 (MQ=255) ccGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaa < 1:634197‑M1/50‑40 (MQ=255) ccGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa < 1:1926377‑M1/49‑39 (MQ=255) ccGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa > 1:4645534‑M1/1‑11 (MQ=255) ccGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa > 1:944386‑M1/1‑11 (MQ=255) ccGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa < 1:2535576‑M1/49‑39 (MQ=255) cGGCATCGATagtctgtatcgggaatgttcgggttaaatatcagcaaaaa < 1:5656073‑M1/50‑41 (MQ=255) cGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaa < 1:5560523‑M1/50‑41 (MQ=255) ggCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaag > 1:1477259‑M1/1‑9 (MQ=255) ggCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaag > 1:2021085‑M1/1‑9 (MQ=255) gCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagc > 1:5765347‑M1/1‑8 (MQ=255) cATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcc > 1:3065917‑M1/1‑7 (MQ=255) accgaTagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc > 1:3622634‑M1/3‑6 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc > 1:644298‑M1/1‑6 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc > 1:3355477‑M1/1‑6 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc < 1:341467‑M1/50‑45 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc > 1:998259‑M1/1‑6 (MQ=255) tCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg < 1:4872258‑M1/50‑46 (MQ=255) tCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg > 1:4714000‑M1/1‑5 (MQ=255) tCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg < 1:1306442‑M1/50‑46 (MQ=255) cGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg > 1:4131190‑M1/1‑4 (MQ=255) aTagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat > 1:5409199‑M1/1‑2 (MQ=255) tagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat > 1:2403766‑M1/1‑1 (MQ=255) tagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat > 1:2819821‑M1/1‑1 (MQ=255) | TTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATGTGTTCCTTAATCACAGCCTCATTGCAGAATGGCGTGTCGTTTATTGT > NC_000913/263466‑263561 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |