| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 103 [0] | [0] 103 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 99 (1.270) | 62/96 | 0.0 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
Only 100 of 103 total aligned reads displayed.
CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320094‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336633‑2336681 CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT < 1:5200832/50‑1CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT > 1:2393396/1‑50 TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT > 1:4967529/1‑50 GATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT > 1:90816/1‑50 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT > 1:5703413/1‑49 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT < 1:3266429/49‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT < 1:6047610/48‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT < 1:3632389/48‑1 TGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCA < 1:203553/50‑1 TGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCA < 1:452578/50‑1 GCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACC < 1:82695/50‑1 GCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCAC < 1:185135/49‑1 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCA < 1:946040/50‑1 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCA > 1:5844760/1‑50 CAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCA < 1:1805999/50‑1 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC > 1:1169430/1‑50 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC > 1:954626/1‑50 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC > 1:558684/1‑50 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC < 1:2939853/50‑1 ATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACT < 1:508556/50‑1 TCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTC < 1:536766/50‑1 CCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCA > 1:3068873/1‑50 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCAT < 1:613962/50‑1 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCAT < 1:5487878/50‑1 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCAT > 1:4126160/1‑50 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCA < 1:5157824/49‑1 TGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATT > 1:4758103/1‑50 TGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATT > 1:871172/1‑50 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC > 1:945624/1‑50 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATT < 1:1425032/48‑1 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATT < 1:5082091/48‑1 TGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCC < 1:1413899/50‑1 TGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC > 1:2415836/1‑49 GGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCA > 1:3939481/1‑50 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCAC < 1:1392610/50‑1 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCAC < 1:3661776/50‑1 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCA < 1:4064868/49‑1 TCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACA < 1:3283590/50‑1 TCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACA < 1:5638621/50‑1 TCATTGTCCCAACGATTACTATTGGTTATATTTCACCACTCATTGCCACA < 1:4382994/50‑1 CATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACAT > 1:2866146/1‑50 CATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACAT > 1:3034054/1‑50 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATT < 1:402430/50‑1 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACAT < 1:891234/49‑1 TGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCC > 1:4782324/1‑50 TCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTT > 1:5620135/1‑50 TCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTT < 1:3346765/50‑1 TCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTT < 1:4241675/50‑1 CCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTG > 1:5277108/1‑50 CCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTG > 1:6013079/1‑50 CCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTG < 1:429221/49‑1 CCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTG < 1:2305958/49‑1 CAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG > 1:4174815/1‑50 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGT < 1:1504581/50‑1 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGT < 1:3155894/50‑1 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGT < 1:5291537/50‑1 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG > 1:804322/1‑49 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG > 1:2927629/1‑49 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG > 1:4976370/1‑49 ACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA < 1:1681374/50‑1 CGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTAT < 1:4827466/50‑1 CGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTAT < 1:1815952/50‑1 CGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA > 1:1019805/1‑49 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATA < 1:1818954/50‑1 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATA < 1:286672/50‑1 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATA < 1:834174/50‑1 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA > 1:5460346/1‑48 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA > 1:738531/1‑48 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG > 1:1084126/1‑50 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG > 1:2871635/1‑50 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG > 1:3021307/1‑50 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG < 1:4563137/50‑1 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG < 1:438161/50‑1 TTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:5351923/1‑50 TACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:5119827/1‑49 TACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:6034552/1‑49 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCC < 1:3247459/49‑1 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:5381904/1‑48 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC < 1:4877459/48‑1 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAG < 1:496222/50‑1 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAG > 1:2548751/1‑50 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAG > 1:5495833/1‑50 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCA < 1:902204/49‑1 TATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCTGC > 1:3720791/1‑50 TATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC > 1:357269/1‑50 TATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC > 1:5535675/1‑50 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCA > 1:3651968/1‑50 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCC < 1:5775997/49‑1 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCC < 1:4572326/49‑1 GGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATT > 1:4817417/1‑50 GGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATT > 1:2402692/1‑50 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATT < 1:5189334/49‑1 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATT < 1:4656389/49‑1 TTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTT < 1:2580217/50‑1 TATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > 1:5493966/1‑50 TATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > 1:1817964/1‑50 ATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT < 1:4499184/49‑1 ATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAC > 1:445743/1‑50 TTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > 1:2134160/1‑50 TTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAC < 1:1799799/49‑1 CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320094‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACG > NC_000913/2336633‑2336681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |