| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,846,301 | Δ20,968 bp | [hycE]–[rpoS] | 21 genes [hycE], hycD, hycC, hycB, hycA, hypA, hypB, hypC, hypD, hypE, fhlA, ygbA, mutS, pphB, ygbI, ygbJ, ygbK, ygbL, ygbM, ygbN, [rpoS] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2846301 | 2867268 | 20968 | 82 [0] | [0] 84 | [hycE]–[rpoS] | [hycE],hycD,hycC,hycB,hycA,hypA,hypB,hypC,hypD,hypE,fhlA,ygbA,mutS,pphB,ygbI,ygbJ,ygbK,ygbL,ygbM,ygbN,[rpoS] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 0 (0.000) | 76 (1.020) | 49/92 | 0.0 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846249‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAA > NC_000913/2867269‑2867316 AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:3535884/1‑50 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:5996359/1‑49 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:3230414/1‑49 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:1257456/1‑49 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:4086186/1‑49 CGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAT > 1:4512406/1‑50 GGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATC < 1:5671785/50‑1 GGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAT > 1:260956/1‑49 GCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCA > 1:963214/1‑50 CGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCAT > 1:4755143/1‑50 CGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCAT > 1:5254976/1‑50 GTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATC > 1:4025331/1‑50 GTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATC > 1:1726209/1‑50 GTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATC > 1:2185985/1‑50 AATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG > 1:4290260/1‑50 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAGCAGCACCGATCATCCG < 1:2971980/49‑1 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG > 1:2170946/1‑50 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG > 1:2184029/1‑50 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG < 1:1806939/49‑1 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG < 1:460215/49‑1 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG < 1:5446351/49‑1 TGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGC > 1:3443423/1‑50 TGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGC > 1:142515/1‑50 GACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCG > 1:5607138/1‑50 CCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:4257247/1‑50 CCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:1236212/1‑50 CATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCG < 1:4984738/50‑1 CATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:406636/1‑49 CATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:5098863/1‑49 CATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:5727366/1‑49 CATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:3340891/1‑49 CATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:1612718/1‑49 ATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:5123219/1‑48 ATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:3601209/1‑48 TCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGA > 1:3890303/1‑48 AGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGG > 1:5412332/1‑50 AGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGG > 1:3657032/1‑50 AGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAG < 1:4899621/49‑1 GTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC < 1:5326107/50‑1 TTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC > 1:1634067/1‑49 TTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC > 1:3688611/1‑49 TTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC > 1:5046484/1‑49 TGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGA > 1:5836524/1‑49 GCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACA > 1:3807222/1‑50 GCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACA > 1:4194153/1‑50 GCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGAC < 1:4880704/49‑1 CGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACAT > 1:3013932/1‑50 CGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACAT > 1:5295788/1‑50 GTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATC > 1:1408499/1‑50 TTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCT > 1:3882627/1‑50 TCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC > 1:5608600/1‑50 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC < 1:4768389/49‑1 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC > 1:897079/1‑49 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC > 1:1190752/1‑49 GTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCA < 1:912407/50‑1 TCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCAC > 1:537/1‑50 CGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:740629/1‑50 CGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:3651611/1‑50 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:1932128/1‑49 GTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:100103/1‑49 TTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:1946511/1‑48 ACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGT > 1:4510039/1‑50 ACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGT > 1:1017646/1‑50 ACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAG < 1:333578/49‑1 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTG > 1:1838612/1‑50 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGT < 1:5537562/49‑1 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGT < 1:1575006/49‑1 CAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGC < 1:1617527/50‑1 AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCG > 1:1040580/1‑50 AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCG > 1:5889024/1‑50 AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCG < 1:1013924/50‑1 AAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCG > 1:2259619/1‑50 ACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCG < 1:4616597/50‑1 ACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGC > 1:5910650/1‑49 CAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGA > 1:2378587/1‑50 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC > 1:1597690/1‑50 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC > 1:960322/1‑50 GCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACG > 1:5673129/1‑50 GCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACG < 1:2874199/50‑1 CACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGC > 1:3586213/1‑50 CCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCG > 1:4977803/1‑49 CGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCA < 1:5010284/50‑1 CGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGC > 1:540785/1‑49 GATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAA < 1:2413117/50‑1 GATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCA > 1:5115821/1‑49 GATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCA > 1:2079456/1‑49 GATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCA > 1:2825391/1‑49 AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846249‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAA > NC_000913/2867269‑2867316 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |