| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,846,301 | Δ20,968 bp | [hycE]–[rpoS] | 21 genes [hycE], hycD, hycC, hycB, hycA, hypA, hypB, hypC, hypD, hypE, fhlA, ygbA, mutS, pphB, ygbI, ygbJ, ygbK, ygbL, ygbM, ygbN, [rpoS] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2846301 | 2867268 | 20968 | 82 [0] | [0] 84 | [hycE]–[rpoS] | [hycE],hycD,hycC,hycB,hycA,hypA,hypB,hypC,hypD,hypE,fhlA,ygbA,mutS,pphB,ygbI,ygbJ,ygbK,ygbL,ygbM,ygbN,[rpoS] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 0 (0.000) | 76 (1.020) | 49/92 | 0.0 | 100% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
TTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAA > NC_000913/2867220‑2867318 | cggcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgat > 1:4512406‑M2/50‑50 (MQ=255) ggcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatc < 1:5671785‑M2/2‑1 (MQ=255) ggcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgat > 1:260956‑M2/49‑49 (MQ=255) gcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatca > 1:963214‑M2/48‑50 (MQ=255) cgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcat > 1:5254976‑M2/47‑50 (MQ=255) cgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcat > 1:4755143‑M2/47‑50 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 1:4025331‑M2/46‑50 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 1:2185985‑M2/46‑50 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 1:1726209‑M2/46‑50 (MQ=255) aatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcg > 1:4290260‑M2/44‑50 (MQ=255) atgaccattcagtttgcgttcgtcgttaccaagcagcaccgaTCATCcg < 1:2971980‑M2/7‑1 (MQ=255) atgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcgg > 1:2170946‑M2/43‑50 (MQ=255) atgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcgg > 1:2184029‑M2/43‑50 (MQ=255) atgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcg < 1:5446351‑M2/7‑1 (MQ=255) atgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcg < 1:1806939‑M2/7‑1 (MQ=255) atgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcg < 1:460215‑M2/7‑1 (MQ=255) tgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcggc > 1:142515‑M2/42‑50 (MQ=255) tgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcggc > 1:3443423‑M2/42‑50 (MQ=255) gaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcggcg > 1:5607138‑M2/41‑50 (MQ=255) ccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:1236212‑M2/39‑50 (MQ=255) ccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:4257247‑M2/39‑50 (MQ=255) cattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:5098863‑M2/38‑49 (MQ=255) cattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:5727366‑M2/38‑49 (MQ=255) cattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:406636‑M2/38‑49 (MQ=255) cattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:3340891‑M2/38‑49 (MQ=255) cattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:1612718‑M2/38‑49 (MQ=255) cattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCGgcggcg < 1:4984738‑M2/13‑1 (MQ=255) attcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:3601209‑M2/37‑48 (MQ=255) attcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:5123219‑M2/37‑48 (MQ=255) tcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCga > 1:3890303‑M2/35‑48 (MQ=255) agtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGagag < 1:4899621‑M2/17‑1 (MQ=255) agtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAgg > 1:3657032‑M2/33‑50 (MQ=255) agtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAgg > 1:5412332‑M2/33‑50 (MQ=255) gtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGc < 1:5326107‑M2/19‑1 (MQ=255) tttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGc > 1:5046484‑M2/31‑49 (MQ=255) tttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGc > 1:3688611‑M2/31‑49 (MQ=255) tttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGc > 1:1634067‑M2/31‑49 (MQ=255) tgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGa > 1:5836524‑M2/29‑49 (MQ=255) gcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGAc < 1:4880704‑M2/22‑1 (MQ=255) gcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACa > 1:3807222‑M2/28‑50 (MQ=255) gcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACa > 1:4194153‑M2/28‑50 (MQ=255) cgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAt > 1:3013932‑M2/27‑50 (MQ=255) cgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAt > 1:5295788‑M2/27‑50 (MQ=255) gttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtc > 1:1408499‑M2/26‑50 (MQ=255) ttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtct > 1:3882627‑M2/25‑50 (MQ=255) tcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtctc > 1:5608600‑M2/24‑50 (MQ=255) cgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtctc > 1:897079‑M2/23‑49 (MQ=255) cgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtctc < 1:4768389‑M2/27‑1 (MQ=255) cgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtctc > 1:1190752‑M2/23‑49 (MQ=255) gtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCa < 1:912407‑M2/29‑1 (MQ=255) tcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCAc > 1:537‑M2/21‑50 (MQ=255) cgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:3651611‑M2/20‑50 (MQ=255) cgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:740629‑M2/20‑50 (MQ=255) gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:1932128‑M2/19‑49 (MQ=255) gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:100103‑M2/19‑49 (MQ=255) ttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:1946511‑M2/18‑48 (MQ=255) accaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAg < 1:333578‑M2/34‑1 (MQ=255) accaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt > 1:4510039‑M2/16‑50 (MQ=255) accaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt > 1:1017646‑M2/16‑50 (MQ=255) ccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt < 1:5537562‑M2/35‑1 (MQ=255) ccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt < 1:1575006‑M2/35‑1 (MQ=255) ccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTg > 1:1838612‑M2/15‑50 (MQ=255) caaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgc < 1:1617527‑M2/37‑1 (MQ=255) aaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcg < 1:1013924‑M2/38‑1 (MQ=255) aaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcg > 1:5889024‑M2/13‑50 (MQ=255) aaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcg > 1:1040580‑M2/13‑50 (MQ=255) aaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcg > 1:2259619‑M2/13‑50 (MQ=255) acagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcgc > 1:5910650‑M2/11‑49 (MQ=255) acagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGcgcg < 1:4616597‑M2/40‑1 (MQ=255) cagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGa > 1:2378587‑M2/10‑50 (MQ=255) agcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAc > 1:960322‑M2/9‑50 (MQ=255) agcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAc > 1:1597690‑M2/9‑50 (MQ=255) gcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcg < 1:2874199‑M2/43‑1 (MQ=255) gcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcg > 1:5673129‑M2/8‑50 (MQ=255) caccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgc > 1:3586213‑M2/7‑50 (MQ=255) ccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgcg > 1:4977803‑M2/5‑49 (MQ=255) cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACgcgc > 1:540785‑M2/4‑49 (MQ=255) cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCa < 1:5010284‑M2/47‑1 (MQ=255) gaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaa < 1:2413117‑M2/48‑1 (MQ=255) gaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCa > 1:5115821‑M2/3‑49 (MQ=255) gaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCa > 1:2079456‑M2/3‑49 (MQ=255) gaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCa > 1:2825391‑M2/3‑49 (MQ=255) tcatcCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaaaa > 1:5604881/1‑50 (MQ=255) tcatcCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaaaa > 1:2599492/1‑50 (MQ=255) | TTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAA > NC_000913/2867220‑2867318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |