| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 90 [0] | [0] 95 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 89 (1.170) +GA |
57/94 | 0.0 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110633‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC > NC_000913/3136382‑3136430 || GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAA < 1:596361/50‑1GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAA > 1:5080681/1‑50GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAA > 1:472971/1‑50GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAA < 1:2103863/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:4693022/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:4454938/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:4453932/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:407878/50‑1 CTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG < 1:5922451/50‑1 TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 1:911641/1‑50 TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 1:2615088/1‑50 TCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 1:1409763/1‑49 CTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCC < 1:5999329/49‑1 CTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC < 1:2700765/48‑1 CAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATT > 1:2482922/1‑50 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTT > 1:1774179/1‑50 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTT < 1:5502087/50‑1 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTT > 1:4193833/1‑50 GCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT > 1:2864426/1‑50 CAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTG < 1:5884281/50‑1 CAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTG < 1:1591975/50‑1 CAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT > 1:1618485/1‑49 AGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGA < 1:1839707/50‑1 AGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTG > 1:1294108/1‑49 AGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTG > 1:4115620/1‑49 AGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTG > 1:550915/1‑49 GCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA < 1:3798082/50‑1 GCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA > 1:5423236/1‑50 GCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA > 1:4295893/1‑50 CACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAAT > 1:3488247/1‑50 CACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAAT > 1:784707/1‑50 ACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATT < 1:4133058/50‑1 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTT < 1:3079178/50‑1 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTT < 1:6011677/50‑1 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTT < 1:485442/50‑1 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATT > 1:289111/1‑49 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATT > 1:5069899/1‑49 TGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTA > 1:4189061/1‑50 TGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTA > 1:1496732/1‑50 TGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTA > 1:4371565/1‑50 TGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTA > 1:5124082/1‑50 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACG < 1:3375650/50‑1 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTAC > 1:5476351/1‑49 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTA < 1:2458232/48‑1 CATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACG > 1:4039807/1‑49 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC < 1:4418634/50‑1 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC < 1:2148929/50‑1 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC < 1:3438202/50‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG > 1:4213029/1‑49 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG > 1:2265977/1‑49 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG > 1:4880847/1‑49 ATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGA > 1:4856639/1‑50 TTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGAC > 1:2392985/1‑50 TGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG < 1:4463167/49‑1 TGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG > 1:1128543/1‑49 GTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCA > 1:270579/1‑50 GTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCA > 1:4026059/1‑50 GTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGC < 1:2779894/49‑1 GTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCAT > 1:3719390/1‑49 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTA < 1:1303667/50‑1 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTA > 1:2427435/1‑50 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTA > 1:3502367/1‑50 CACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:4199224/1‑50 CACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:348732/1‑50 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATC < 1:4539854/50‑1 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:4377677/1‑49 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:4268416/1‑49 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:201538/1‑49 CCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:5641485/1‑48 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG < 1:699732/50‑1 CGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT > 1:3643781/1‑50 CGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT > 1:5938601/1‑50 CAGCGCATAGAACGCCATTTTGAATTTACGAACGGGCGCATTATCAGTGA < 1:4760411/50‑1 CAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGA > 1:1278327/1‑50 AGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAC > 1:5394336/1‑50 AGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAC < 1:3680228/50‑1 AGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAC > 1:3984118/1‑50 AGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAC > 1:5526395/1‑50 GCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACT < 1:1223100/50‑1 CGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 1:114657/1‑50 CGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT < 1:358777/50‑1 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 1:1833446/1‑49 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 1:2784367/1‑49 CATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTA < 1:3787434/50‑1 CATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT > 1:2271974/1‑49 CATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT > 1:1845731/1‑49 ATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAA > 1:4892477/1‑50 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC < 1:5932677/50‑1 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC > 1:441132/1‑50 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > 1:1502747/1‑50 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG < 1:5929502/49‑1 AACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC < 1:5189315/50‑1 AACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > 1:5342963/1‑49 || GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110633‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC > NC_000913/3136382‑3136430 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |