| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 90 [0] | [0] 95 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 89 (1.170) +GA |
57/94 | 0.0 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
CCCTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCA > NC_000913/3136333‑3136431 | ggcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaa > 1:472971‑M2/50‑50 (MQ=255)ggcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaa > 1:5080681‑M2/50‑50 (MQ=255)ggcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaa < 1:596361‑M2/1‑1 (MQ=255)ggcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaa < 1:2103863‑M2/1‑1 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:407878‑M2/2‑1 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:4693022‑M2/2‑1 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:4454938‑M2/2‑1 (MQ=255) gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:4453932‑M2/2‑1 (MQ=255) cttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACg < 1:5922451‑M2/3‑1 (MQ=255) ttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:911641‑M2/47‑50 (MQ=255) ttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:2615088‑M2/47‑50 (MQ=255) tctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:1409763‑M2/46‑49 (MQ=255) ctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGcc < 1:5999329‑M2/5‑1 (MQ=255) ctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc < 1:2700765‑M2/4‑1 (MQ=255) cagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtt > 1:2482922‑M2/43‑50 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAttt > 1:1774179‑M2/42‑50 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAttt < 1:5502087‑M2/9‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAttt > 1:4193833‑M2/42‑50 (MQ=255) gcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt > 1:2864426‑M2/41‑50 (MQ=255) cagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCAtttt > 1:1618485‑M2/40‑49 (MQ=255) cagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTg < 1:1591975‑M2/11‑1 (MQ=255) cagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTg < 1:5884281‑M2/11‑1 (MQ=255) agcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTg > 1:1294108‑M2/39‑49 (MQ=255) agcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTg > 1:550915‑M2/39‑49 (MQ=255) agcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTg > 1:4115620‑M2/39‑49 (MQ=255) agcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGa < 1:1839707‑M2/12‑1 (MQ=255) gcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGaa > 1:4295893‑M2/38‑50 (MQ=255) gcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGaa < 1:3798082‑M2/13‑1 (MQ=255) gcactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGaa > 1:5423236‑M2/38‑50 (MQ=255) cactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAt > 1:784707‑M2/37‑50 (MQ=255) cactgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAt > 1:3488247‑M2/37‑50 (MQ=255) actgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt < 1:4133058‑M2/15‑1 (MQ=255) ctgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAttt < 1:485442‑M2/16‑1 (MQ=255) ctgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAttt < 1:6011677‑M2/16‑1 (MQ=255) ctgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAttt < 1:3079178‑M2/16‑1 (MQ=255) ctgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt > 1:5069899‑M2/35‑49 (MQ=255) ctgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAAtt > 1:289111‑M2/35‑49 (MQ=255) tgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTa > 1:5124082‑M2/34‑50 (MQ=255) tgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTa > 1:4371565‑M2/34‑50 (MQ=255) tgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTa > 1:1496732‑M2/34‑50 (MQ=255) tgacatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTa > 1:4189061‑M2/34‑50 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTa < 1:2458232‑M2/17‑1 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTAc > 1:5476351‑M2/32‑49 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACg < 1:3375650‑M2/19‑1 (MQ=255) catcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACg > 1:4039807‑M2/31‑49 (MQ=255) tcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAAc < 1:2148929‑M2/22‑1 (MQ=255) tcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAAc < 1:3438202‑M2/22‑1 (MQ=255) tcaatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAAc < 1:4418634‑M2/22‑1 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg > 1:2265977‑M2/27‑49 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg > 1:4880847‑M2/27‑49 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACg > 1:4213029‑M2/27‑49 (MQ=255) atttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGa > 1:4856639‑M2/26‑50 (MQ=255) tttgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGAc > 1:2392985‑M2/25‑50 (MQ=255) tgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACg > 1:1128543‑M2/23‑49 (MQ=255) tgtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACg < 1:4463167‑M2/27‑1 (MQ=255) gtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGc < 1:2779894‑M2/28‑1 (MQ=255) gtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCa > 1:4026059‑M2/22‑50 (MQ=255) gtgtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCa > 1:270579‑M2/22‑50 (MQ=255) gtcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCAt > 1:3719390‑M2/20‑49 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTa < 1:1303667‑M2/32‑1 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTa > 1:3502367‑M2/19‑50 (MQ=255) tcacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTa > 1:2427435‑M2/19‑50 (MQ=255) cacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:348732‑M2/18‑50 (MQ=255) cacccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:4199224‑M2/18‑50 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:4377677‑M2/17‑49 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:201538‑M2/17‑49 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:4268416‑M2/17‑49 (MQ=255) acccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATc < 1:4539854‑M2/34‑1 (MQ=255) cccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTAt > 1:5641485‑M2/16‑48 (MQ=255) ccgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAg < 1:699732‑M2/36‑1 (MQ=255) cgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGt > 1:5938601‑M2/14‑50 (MQ=255) cgcagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGt > 1:3643781‑M2/14‑50 (MQ=255) cagcgcatagaACGCCATTTTGAATTTACGAACGGGCGCATTATCAGTGa < 1:4760411‑M2/39‑1 (MQ=255) cagcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGa > 1:1278327‑M2/12‑50 (MQ=255) agcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAc < 1:3680228‑M2/40‑1 (MQ=255) agcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAc > 1:5394336‑M2/11‑50 (MQ=255) agcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAc > 1:3984118‑M2/11‑50 (MQ=255) agcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGAc > 1:5526395‑M2/11‑50 (MQ=255) gcgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACt < 1:1223100‑M2/41‑1 (MQ=255) cgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt < 1:358777‑M2/42‑1 (MQ=255) cgcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 1:114657‑M2/9‑50 (MQ=255) gcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 1:1833446‑M2/8‑49 (MQ=255) gcatagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 1:2784367‑M2/8‑49 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACttt > 1:2271974‑M2/7‑49 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACttt > 1:1845731‑M2/7‑49 (MQ=255) catagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTa < 1:3787434‑M2/44‑1 (MQ=255) atagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTaa > 1:4892477‑M2/6‑50 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc > 1:441132‑M2/5‑50 (MQ=255) tagaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc < 1:5932677‑M2/46‑1 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACgg > 1:1502747‑M2/3‑50 (MQ=255) gaACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg < 1:5929502‑M2/47‑1 (MQ=255) aACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACgg > 1:5342963‑M2/2‑49 (MQ=255) aACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGc < 1:5189315‑M2/49‑1 (MQ=255) aCGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCa < 1:366558/50‑1 (MQ=255) aCGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCa > 1:2981884/1‑50 (MQ=255) | CCCTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGCA > NC_000913/3136333‑3136431 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |