| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 71 [0] | [0] 71 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 69 (0.870) | 51/98 | 0.0 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4299580‑4299627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAC > NC_000913/4325166‑4325214 ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGA < 1:110873/50‑1 CGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGAT > 1:2840302/1‑50 GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG < 1:3626063/50‑1 GGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG > 1:1552997/1‑49 GACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCA < 1:985051/50‑1 CCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGC < 1:3172709/50‑1 CCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGC > 1:219385/1‑50 CTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCC > 1:4850748/1‑50 TGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCT > 1:3765968/1‑50 CCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCC > 1:1589557/1‑50 CCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCT < 1:2214812/48‑1 CTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCC < 1:5961415/50‑1 CTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCC > 1:3884415/1‑50 ATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTA < 1:2883628/49‑1 ATACCCGCCGCCCAGCAATTTCATCAACTGAATGGATGCAGCCTCCCTA > 1:292690/1‑49 TACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAA > 1:5982931/1‑49 CCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAA < 1:1700779/49‑1 CCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAA < 1:4330476/50‑1 CGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAG < 1:5845769/50‑1 CGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAG > 1:298990/1‑50 GCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGT < 1:5764958/50‑1 CCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTG < 1:5666988/50‑1 CCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTG > 1:2628284/1‑50 CGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGG > 1:2491128/1‑50 GCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGC > 1:3192987/1‑50 GCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGC < 1:1507407/50‑1 CCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCT < 1:4816765/50‑1 CCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTC > 1:790052/1‑50 CCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTC > 1:651835/1‑50 CCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTC < 1:4511954/50‑1 CAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCC < 1:5991002/50‑1 AGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCA < 1:1361719/50‑1 AGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCA < 1:4305608/50‑1 AGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCA < 1:1958839/50‑1 GCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCAT > 1:1757997/1‑50 GCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCAT < 1:5005129/50‑1 CGATTTCATCAACTGAATGGATGCGGCCTCCCTAAAAAAGTGGCTCCATC > 1:3945924/1‑50 CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC < 1:4603993/50‑1 CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC > 1:3693591/1‑50 CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC > 1:4616194/1‑50 CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC < 1:3975774/50‑1 GATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCG > 1:362064/1‑50 GATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCG > 1:4192134/1‑50 ATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGT > 1:5317006/1‑50 ATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGT > 1:5015672/1‑50 ATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGT > 1:2695829/1‑50 TTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTG > 1:4335527/1‑50 TTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTG > 1:1539451/1‑50 TTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTG < 1:1423064/50‑1 TCATCAACTGGATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGG < 1:3357204/49‑1 TCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGG < 1:1155951/49‑1 TCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGG < 1:3046987/49‑1 CATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCG > 1:6019060/1‑50 CATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCG > 1:288912/1‑50 CATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCG > 1:4341674/1‑50 ATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCG < 1:5102327/49‑1 ATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCG < 1:550698/49‑1 ATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCG > 1:3308871/1‑49 CAACCGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGAT > 1:1518735/1‑50 AACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATT < 1:1764849/50‑1 AACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATT < 1:4273583/50‑1 AACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATT < 1:1236944/50‑1 AACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGAT < 1:1554528/49‑1 CTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTAT < 1:5907864/50‑1 GAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTG > 1:1109441/1‑50 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT < 1:5404919/50‑1 ATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT > 1:2026277/1‑49 GGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAC > 1:401545/1‑50 GGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAC > 1:2959705/1‑50 ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4299580‑4299627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAC > NC_000913/4325166‑4325214 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |