| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 71 [0] | [0] 71 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 69 (0.870) | 51/98 | 0.0 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
CTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCGTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAC > NC_000913/4325118‑4325214 | acgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGa < 1:110873‑M2/2‑1 (MQ=255) cgggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGAt > 1:2840302‑M2/48‑50 (MQ=255) gggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg < 1:3626063‑M2/4‑1 (MQ=255) ggacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATg > 1:1552997‑M2/46‑49 (MQ=255) gacctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCa < 1:985051‑M2/6‑1 (MQ=255) cctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGc < 1:3172709‑M2/8‑1 (MQ=255) cctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGc > 1:219385‑M2/43‑50 (MQ=255) ctgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGcc > 1:4850748‑M2/42‑50 (MQ=255) tgcctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCt > 1:3765968‑M2/41‑50 (MQ=255) cctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCt < 1:2214812‑M2/10‑1 (MQ=255) cctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTcc > 1:1589557‑M2/39‑50 (MQ=255) ctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTccc < 1:5961415‑M2/13‑1 (MQ=255) ctgatacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTccc > 1:3884415‑M2/38‑50 (MQ=255) atacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTa < 1:2883628‑M2/15‑1 (MQ=255) atacccgccgcccagcaatttcatcaactgaatgGATGCAGCCTCCCTa > 1:292690‑M2/35‑49 (MQ=255) tacccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaa > 1:5982931‑M2/34‑49 (MQ=255) cccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaaaa < 1:1700779‑M2/18‑1 (MQ=255) ccgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTaaaaaa < 1:4330476‑M2/20‑1 (MQ=255) cgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAg < 1:5845769‑M2/21‑1 (MQ=255) cgccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAg > 1:298990‑M2/30‑50 (MQ=255) gccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGt < 1:5764958‑M2/22‑1 (MQ=255) ccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTg < 1:5666988‑M2/23‑1 (MQ=255) ccgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTg > 1:2628284‑M2/28‑50 (MQ=255) cgcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTgg > 1:2491128‑M2/27‑50 (MQ=255) gcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGc > 1:3192987‑M2/26‑50 (MQ=255) gcccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGc < 1:1507407‑M2/25‑1 (MQ=255) cccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCt < 1:4816765‑M2/26‑1 (MQ=255) ccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTc > 1:790052‑M2/24‑50 (MQ=255) ccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTc > 1:651835‑M2/24‑50 (MQ=255) ccagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTc < 1:4511954‑M2/27‑1 (MQ=255) cagcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTcc < 1:5991002‑M2/28‑1 (MQ=255) agcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCa < 1:4305608‑M2/29‑1 (MQ=255) agcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCa < 1:1361719‑M2/29‑1 (MQ=255) agcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCa < 1:1958839‑M2/29‑1 (MQ=255) gcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCAt < 1:5005129‑M2/30‑1 (MQ=255) gcgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCAt > 1:1757997‑M2/21‑50 (MQ=255) cgatttcatcaactgaatgGATGCGGCCTCCCTAAAAAAGTGGCTCCATc > 1:3945924‑M2/20‑50 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATc > 1:3693591‑M2/20‑50 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATc < 1:3975774‑M2/31‑1 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATc > 1:4616194‑M2/20‑50 (MQ=255) cgatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATc < 1:4603993‑M2/31‑1 (MQ=255) gatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCg > 1:4192134‑M2/19‑50 (MQ=255) gatttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCg > 1:362064‑M2/19‑50 (MQ=255) atttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGt > 1:2695829‑M2/18‑50 (MQ=255) atttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGt > 1:5317006‑M2/18‑50 (MQ=255) atttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGt > 1:5015672‑M2/18‑50 (MQ=255) tttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTg < 1:1423064‑M2/34‑1 (MQ=255) tttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTg > 1:4335527‑M2/17‑50 (MQ=255) tttcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTg > 1:1539451‑M2/17‑50 (MQ=255) tcatcaactggatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTgg < 1:3357204‑M2/35‑1 (MQ=255) tcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTgg < 1:1155951‑M2/35‑1 (MQ=255) tcatcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTgg < 1:3046987‑M2/35‑1 (MQ=255) catcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCg > 1:6019060‑M2/14‑50 (MQ=255) catcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCg > 1:288912‑M2/14‑50 (MQ=255) catcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCg > 1:4341674‑M2/14‑50 (MQ=255) atcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCg < 1:5102327‑M2/37‑1 (MQ=255) atcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCg < 1:550698‑M2/37‑1 (MQ=255) atcaactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCg > 1:3308871‑M2/13‑49 (MQ=255) caaccgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGat > 1:1518735‑M2/11‑50 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGatt < 1:1764849‑M2/41‑1 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGatt < 1:1236944‑M2/41‑1 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGatt < 1:4273583‑M2/41‑1 (MQ=255) aactgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGat < 1:1554528‑M2/40‑1 (MQ=255) ctgaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattat < 1:5907864‑M2/43‑1 (MQ=255) gaatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtg > 1:1109441‑M2/6‑50 (MQ=255) aatgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgt < 1:5404919‑M2/46‑1 (MQ=255) atgGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgt > 1:2026277‑M2/4‑49 (MQ=255) gGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc > 1:401545‑M2/2‑50 (MQ=255) gGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc > 1:2959705‑M2/2‑50 (MQ=255) gatgCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc < 1:344108/49‑1 (MQ=255) gatgCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc < 1:4851086/49‑1 (MQ=255) | CTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCGTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAC > NC_000913/4325118‑4325214 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |