| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,994,992 | Δ3,877 bp | [ygeL]–ygeQ | [ygeL], ygeN, ygeO, insD‑4, insC‑4, ygeP, ygeQ | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2994992 | 2998868 | 3877 | 157 [0] | [0] 158 | [ygeL]–ygeQ | [ygeL],ygeN,ygeO,insD‑4,insC‑4,ygeP,ygeQ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2994991 | 0 (0.000) | 150 (1.970) | 71/94 | 0.0 | 100% | pseudogene (102/156 nt) | ygeL | protein YgeL |
| ? | NC_000913 | 2998869 = | 0 (0.000) | intergenic (‑41/+115) | ygeQ/glyU | protein YgeQ/tRNA‑Gly | |||||
Only 100 of 157 total aligned reads displayed.
CTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAACAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCC > NC_000913/2994942‑2995040 | cTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCC < 1:5369427‑M1/50‑1 (MQ=255) gTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCac > 1:603052‑M1/1‑48 (MQ=255) tAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCact > 1:1820728‑M1/1‑47 (MQ=255) tAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCact > 1:1295344‑M1/1‑47 (MQ=255) tAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCact > 1:1409242‑M1/1‑47 (MQ=255) tAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCac < 1:1253279‑M1/49‑3 (MQ=255) tAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCa < 1:2595701‑M1/48‑2 (MQ=255) tAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCa < 1:4626030‑M1/48‑2 (MQ=255) tAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCa < 1:1897597‑M1/48‑2 (MQ=255) tAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCa < 1:440783‑M1/48‑2 (MQ=255) aGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCact > 1:3421473‑M1/1‑46 (MQ=255) gATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCactta < 1:2498975‑M1/50‑6 (MQ=255) gATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCactta > 1:4214866‑M1/1‑45 (MQ=255) gATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCactt < 1:1742077‑M1/49‑5 (MQ=255) tttGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatt > 1:4751535‑M1/1‑43 (MQ=255) tttGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatt > 1:1525816‑M1/1‑43 (MQ=255) tttGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatt < 1:3810411‑M1/50‑8 (MQ=255) tGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttattt < 1:895644‑M1/49‑9 (MQ=255) gTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaa > 1:1931276‑M1/1‑40 (MQ=255) gTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttattta < 1:5944234‑M1/49‑10 (MQ=255) gTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttattta < 1:4642156‑M1/49‑10 (MQ=255) gTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttattta < 1:886538‑M1/49‑10 (MQ=255) ttACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaac < 1:621827‑M1/50‑12 (MQ=255) ttACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaac < 1:4891119‑M1/50‑12 (MQ=255) ttACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaa < 1:4472920‑M1/49‑11 (MQ=255) tACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaac > 1:1695501‑M1/1‑38 (MQ=255) acacTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaaca < 1:5718461‑M1/49‑13 (MQ=255) acacTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaaca < 1:1356992‑M1/49‑13 (MQ=255) acTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaact < 1:5131380‑M1/50‑16 (MQ=255) cTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaactt > 1:2954584‑M1/1‑34 (MQ=255) cTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaactt < 1:4745195‑M1/50‑17 (MQ=255) cTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaactt < 1:1002168‑M1/50‑17 (MQ=255) cTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaactt < 1:5241965‑M1/50‑17 (MQ=255) cTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaactt < 1:1943630‑M1/50‑17 (MQ=255) cGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaa < 1:244869‑M1/50‑20 (MQ=255) cGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaa < 1:2608658‑M1/50‑20 (MQ=255) cGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaa < 1:5215051‑M1/50‑20 (MQ=255) cGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaa < 1:3171701‑M1/50‑20 (MQ=255) cGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaa < 1:4339235‑M1/50‑20 (MQ=255) cGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaa < 1:5431306‑M1/50‑20 (MQ=255) cGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaa < 1:759075‑M1/50‑20 (MQ=255) cGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttga < 1:1882123‑M1/49‑19 (MQ=255) cGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttg < 1:751004‑M1/48‑18 (MQ=255) cGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttg < 1:3660129‑M1/48‑18 (MQ=255) gCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaa < 1:2281214‑M1/50‑21 (MQ=255) gCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaa < 1:5268339‑M1/50‑21 (MQ=255) cTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaa < 1:3656774‑M1/50‑22 (MQ=255) tataGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaa > 1:3907682‑M1/1‑28 (MQ=255) tataGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaa > 1:308755‑M1/1‑28 (MQ=255) tataGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaa > 1:3274654‑M1/1‑28 (MQ=255) tataGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaa > 1:3228562‑M1/1‑28 (MQ=255) ataGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaat > 1:137815‑M1/1‑27 (MQ=255) taGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataa < 1:1007506‑M1/50‑25 (MQ=255) taGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataa < 1:1348527‑M1/50‑25 (MQ=255) taGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaata < 1:3615999‑M1/49‑24 (MQ=255) gCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataagg < 1:1833792‑M1/50‑27 (MQ=255) gCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataagg > 1:5264472‑M1/1‑24 (MQ=255) gCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataag < 1:1360236‑M1/49‑26 (MQ=255) tttCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtg > 1:4463285‑M1/1‑22 (MQ=255) ttcttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgt > 1:2775834‑M1/1‑21 (MQ=255) tcttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgt < 1:4947211‑M1/49‑30 (MQ=255) tcttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgt < 1:741112‑M1/49‑30 (MQ=255) tcttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgt < 1:3014512‑M1/49‑30 (MQ=255) tcttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgt < 1:4151396‑M1/49‑30 (MQ=255) tcttcAGATCTGTATAGCCCacttatttaacaacttgaaaagaaggtgt < 1:2643414‑M1/49‑30 (MQ=255) cttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgtt < 1:1125830‑M1/49‑31 (MQ=255) cAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgtttta < 1:3548660‑M1/49‑34 (MQ=255) cAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgtttta < 1:3580521‑M1/49‑34 (MQ=255) cAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgtttta < 1:2117946‑M1/49‑34 (MQ=255) aGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacc < 1:330137‑M1/50‑36 (MQ=255) aGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacc < 1:5305041‑M1/50‑36 (MQ=255) aGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttac < 1:4544249‑M1/49‑35 (MQ=255) aGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttac < 1:3592292‑M1/49‑35 (MQ=255) gATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacct < 1:4063620‑M1/50‑37 (MQ=255) aTCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacctg > 1:1517209‑M1/1‑13 (MQ=255) tCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacctgg > 1:226257‑M1/1‑12 (MQ=255) cTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacctggg > 1:3901124‑M1/1‑11 (MQ=255) cTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacctggg > 1:5542410‑M1/1‑11 (MQ=255) tttATAGCCCacttatttaacaacttgaaaataaggtgttttacctgggt > 1:240069‑M1/1‑10 (MQ=255) ttATAGCCCacttatttaacaacttgaaaataaggtgttttacctgggtt > 1:5070142‑M1/1‑9 (MQ=255) ttATAGCCCacttatttaacaacttgaaaataaggtgttttacctgggtt > 1:4383059‑M1/1‑9 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctgggtt < 1:4441753‑M1/49‑42 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctgggt < 1:1962697‑M1/48‑41 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctggg < 1:5706778‑M1/47‑40 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctggg < 1:5875384‑M1/47‑40 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctgg < 1:5465463‑M1/46‑39 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctg < 1:2146576‑M1/45‑38 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctg < 1:1140231‑M1/45‑38 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgtttt < 1:3471408‑M1/40‑33 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgtttt < 1:5335705‑M1/40‑33 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttt < 1:4742472‑M1/39‑32 (MQ=255) taGCCCacttatttaacaacttgaaaataaggtgttttacctgggttgtt < 1:3611217‑M1/50‑45 (MQ=255) taGCCCacttatttaacaacttgaaaataaggtgttttacctgggttgt > 1:1474688‑M1/1‑6 (MQ=255) taGCCCacttatttaacaacttgaaaataaggtgttttacctgggttgt < 1:630371‑M1/49‑44 (MQ=255) gCCCacttatttaacaacttgaaaataaggtgttttacctgggttgttac < 1:4219099‑M1/50‑47 (MQ=255) cccacttatttaacaacttgaaaataaggtgttttacctgggttgttac > 1:6006367‑M1/1‑3 (MQ=255) ccacttatttaacaacttgaaaataaggtgttttacctgggttgttaca > 1:145962‑M1/1‑2 (MQ=255) ccacttatttaacaacttgaaaataaggtgttttacctgggttgttaca > 1:604838‑M1/1‑2 (MQ=255) cacttatttaacaacttgaaaataaggtgttttacctgggttgttacaaa < 1:3920284‑M1/50‑50 (MQ=255) cacttatttaacaacttgaaaataaggtgttttacctgggttgttacaa > 1:1588476‑M1/1‑1 (MQ=255) | CTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAACAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCC > NC_000913/2994942‑2995040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |