| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,184,782 | Δ6,916 bp | ubiK–yqiI | ubiK, ygiL, yqiG, insC‑5, insD‑5, yqiG, yqiH, yqiI | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3184782 | 3191697 | 6916 | 101 [0] | [0] 102 | ubiK–yqiI | ubiK,ygiL,yqiG,insC‑5,insD‑5,yqiG,yqiH,yqiI |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3184781 | 0 (0.000) | 99 (1.270) | 59/96 | 0.0 | 100% | intergenic (‑315/‑59) | ribB/ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| ? | NC_000913 | 3191698 = | 0 (0.000) | intergenic (+2/+41) | yqiI/glgS | putative fimbrial protein YqiI/surface composition regulator | |||||
Only 100 of 101 total aligned reads displayed.
GCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGG > NC_000913/3184733‑3184830 | gCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATa > 1:5263581‑M1/1‑49 (MQ=255)gCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATa > 1:2209998‑M1/1‑49 (MQ=255) cTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATat > 1:519499‑M1/1‑48 (MQ=255) cTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATat > 1:4492362‑M1/1‑48 (MQ=255) cTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATat < 1:1448407‑M1/50‑3 (MQ=255) cTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATat < 1:1448814‑M1/50‑3 (MQ=255) tAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatc > 1:1020850‑M1/1‑47 (MQ=255) tAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatc > 1:5033112‑M1/1‑47 (MQ=255) tAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatc > 1:1854615‑M1/1‑47 (MQ=255) aaTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatc > 1:1349857‑M1/1‑46 (MQ=255) aTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatcta < 1:2817041‑M1/50‑6 (MQ=255) aTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatcta < 1:1411005‑M1/50‑6 (MQ=255) aTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatct > 1:338713‑M1/1‑45 (MQ=255) tGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaa > 1:1466107‑M1/1‑44 (MQ=255) tGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaa > 1:2136613‑M1/1‑44 (MQ=255) aTTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaata < 1:898193‑M1/50‑9 (MQ=255) aTTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaata > 1:5957259‑M1/1‑42 (MQ=255) aTTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaata > 1:5954544‑M1/1‑42 (MQ=255) aTTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaata < 1:4959411‑M1/50‑9 (MQ=255) aTTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaata < 1:3030846‑M1/50‑9 (MQ=255) aTTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaata > 1:2575040‑M1/1‑42 (MQ=255) aTTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaat < 1:1879781‑M1/49‑8 (MQ=255) ttAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaata > 1:2326069‑M1/1‑41 (MQ=255) tAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatac > 1:6027388‑M1/1‑40 (MQ=255) tAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatac > 1:5933989‑M1/1‑40 (MQ=255) aGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaataca > 1:3856344‑M1/1‑39 (MQ=255) aGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaataca > 1:2730242‑M1/1‑39 (MQ=255) gCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaa < 1:3735303‑M1/50‑13 (MQ=255) gCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaa < 1:1741079‑M1/49‑12 (MQ=255) cGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaac < 1:4639858‑M1/50‑14 (MQ=255) cGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaa > 1:1756961‑M1/1‑37 (MQ=255) cGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaa > 1:1534644‑M1/1‑37 (MQ=255) ggCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaaca > 1:1356383‑M1/1‑36 (MQ=255) ggCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaaca < 1:4024675‑M1/50‑15 (MQ=255) gcagcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacac < 1:5225183‑M1/50‑16 (MQ=255) cagcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacact < 1:1564560‑M1/50‑17 (MQ=255) cagcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacact < 1:4330576‑M1/50‑17 (MQ=255) cagcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacac > 1:3214881‑M1/1‑34 (MQ=255) cagcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacac > 1:3206132‑M1/1‑34 (MQ=255) agcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacact > 1:2418919‑M1/1‑33 (MQ=255) agcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacact > 1:2814603‑M1/1‑33 (MQ=255) caACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaa < 1:4348621‑M1/50‑20 (MQ=255) caACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaa < 1:1222862‑M1/50‑20 (MQ=255) caACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaa > 1:3966694‑M1/1‑31 (MQ=255) aaCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaa > 1:5194354‑M1/1‑30 (MQ=255) aaCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaa > 1:289447‑M1/1‑30 (MQ=255) aaCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaa < 1:5770816‑M1/50‑21 (MQ=255) aaCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaa > 1:5542580‑M1/1‑30 (MQ=255) aCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaac > 1:2280019‑M1/1‑29 (MQ=255) aCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaac < 1:5693894‑M1/50‑22 (MQ=255) aCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaac > 1:3407690‑M1/1‑29 (MQ=255) aCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaac < 1:3472873‑M1/50‑22 (MQ=255) aCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaac > 1:5650260‑M1/1‑29 (MQ=255) cGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacg < 1:5627460‑M1/50‑23 (MQ=255) cGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacg > 1:5119094‑M1/1‑28 (MQ=255) cGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacg > 1:2367327‑M1/1‑28 (MQ=255) cGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacg < 1:1567190‑M1/50‑23 (MQ=255) cGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacg < 1:1774275‑M1/50‑23 (MQ=255) cGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacg < 1:2952542‑M1/50‑23 (MQ=255) gCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgg > 1:1075428‑M1/1‑27 (MQ=255) gCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgg < 1:5947056‑M1/50‑24 (MQ=255) gCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgg > 1:3161767‑M1/1‑27 (MQ=255) gCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgg < 1:2283864‑M1/50‑24 (MQ=255) cATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacggg > 1:5483927‑M1/1‑26 (MQ=255) aTAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggc > 1:3821170‑M1/1‑25 (MQ=255) tAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggc > 1:4840782‑M1/1‑24 (MQ=255) aGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggcca > 1:3013903‑M1/1‑23 (MQ=255) gCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggcca < 1:605707‑M1/49‑28 (MQ=255) gCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggcca < 1:1773384‑M1/49‑28 (MQ=255) ttCACATAATTCTGGTTTATatctaatacaaacactaaaacgggccat > 1:1620836‑M1/1‑20 (MQ=255) cacaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcagg > 1:1127531‑M1/1‑18 (MQ=255) cacaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatca < 1:394354‑M1/48‑31 (MQ=255) acaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggc > 1:4209884‑M1/1‑17 (MQ=255) acaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggc < 1:2120237‑M1/50‑34 (MQ=255) acaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggc < 1:1829513‑M1/50‑34 (MQ=255) acaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcagg < 1:2821214‑M1/49‑33 (MQ=255) caTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcc < 1:5582131‑M1/50‑35 (MQ=255) caTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcc > 1:3832249‑M1/1‑16 (MQ=255) caTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcc > 1:3187603‑M1/1‑16 (MQ=255) aTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggccc < 1:554955‑M1/50‑36 (MQ=255) tAATTCTTGTTTATatctaatacaaacactaaaacgggccatcaggcccg > 1:77195‑M1/1‑14 (MQ=255) tAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccg > 1:2173259‑M1/1‑14 (MQ=255) tAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccg > 1:277243‑M1/1‑14 (MQ=255) aTTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgt > 1:1013227‑M1/1‑12 (MQ=255) ttCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgtta > 1:4453101‑M1/1‑11 (MQ=255) tCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgtta > 1:1618789‑M1/1‑10 (MQ=255) tCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgtta > 1:4005599‑M1/1‑10 (MQ=255) tGGTTTATatctaatacaaacactaaaacgggccatcaggcccgttatat > 1:3691812‑M1/1‑8 (MQ=255) gTTTATatctaatacaaacactaaaacgggccatcaggcccgttatat > 1:1139005‑M1/1‑6 (MQ=255) gTTTATatctaatacaaacactaaaacgggccatcaggcccgttatat > 1:1212164‑M1/1‑6 (MQ=255) gTTTATatctaatacaaacactaaaacgggccatcaggcccgttata < 1:5725194‑M1/47‑42 (MQ=255) tttATatctaatacaaacactaaaacgggccatcaggcccgttatatcag < 1:1854173‑M1/50‑46 (MQ=255) tatatctaatacaaacactaaaacgggccatcaggcccgttatatcagtg > 1:5557688‑M1/1‑3 (MQ=255) tatatctaatacaaacactaaaacgggccatcaggcccgttatatcagtg > 1:3652893‑M1/1‑3 (MQ=255) tatatctaatacaaacactaaaacgggccatcaggcccgttatatcagt < 1:5493122‑M1/49‑47 (MQ=255) tatatctaatacaaacactaaaacgggccatcaggcccgttatatcagt < 1:5960514‑M1/49‑47 (MQ=255) tatatctaatacaaacactaaaacgggccatcaggcccgttatatcagt < 1:3035114‑M1/49‑47 (MQ=255) atatctaatacaaacactaaaacgggccatcaggcccgttatatcagtgc > 1:3651382‑M1/1‑2 (MQ=255) tatctaatacaaacactaaaacgggccatcaggcccgttatatcagtgct > 1:3852902‑M1/1‑1 (MQ=255) tatctaatacaaacactaaaacgggccatcaggcccgttatatcagtgc < 1:5532279‑M1/49‑49 (MQ=255) | GCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGG > NC_000913/3184733‑3184830 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |