| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,761,993 | Δ8,250 bp | rhsA–yibV | rhsA, yibA, yibJ, yibG, yibS, yibV | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3761993 | 3770242 | 8250 | 121 [0] | [0] 119 | rhsA–yibV | rhsA,yibA,yibJ,yibG,yibS,yibV |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3761992 | 0 (0.000) | 116 (1.490) | 67/96 | 0.0 | 100% | intergenic (‑37/‑191) | yibF/rhsA | glutathione transferase‑like protein YibF/rhs element protein RhsA |
| ? | NC_000913 | 3770243 = | 0 (0.000) | coding (1137/1137 nt) | yibH | inner membrane protein YibH | |||||
Only 100 of 121 total aligned reads displayed.
CGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCA > NC_000913/3761943‑3762040 | cgacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC < 1:3457679‑M1/50‑1 (MQ=255)cgacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC < 1:6002897‑M1/50‑1 (MQ=255) gacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCt < 1:3146554‑M1/50‑2 (MQ=255) gacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCt < 1:5370395‑M1/50‑2 (MQ=255) gacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCt < 1:5012352‑M1/50‑2 (MQ=255) acgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCt > 1:4985468‑M1/1‑48 (MQ=255) cgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtc > 1:3090891‑M1/1‑47 (MQ=255) gaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaa > 1:4447116‑M1/1‑46 (MQ=255) aGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaat < 1:2703805‑M1/50‑6 (MQ=255) gTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatg < 1:5306888‑M1/50‑7 (MQ=255) tttCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatga < 1:4461958‑M1/50‑8 (MQ=255) ttCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgat > 1:210389‑M1/1‑42 (MQ=255) tCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatc > 1:5030762‑M1/1‑41 (MQ=255) tCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgat < 1:862967‑M1/49‑9 (MQ=255) tCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgat < 1:4279135‑M1/49‑9 (MQ=255) tCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgat < 1:813221‑M1/49‑9 (MQ=255) tCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgat < 1:540927‑M1/49‑9 (MQ=255) aTGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatcca < 1:1625037‑M1/50‑12 (MQ=255) aTGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatcca < 1:3657773‑M1/50‑12 (MQ=255) aTGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatcc > 1:4747259‑M1/1‑39 (MQ=255) ccGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaat < 1:340195‑M1/50‑15 (MQ=255) ccGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaat < 1:5744146‑M1/50‑15 (MQ=255) ccGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaa < 1:5269809‑M1/49‑14 (MQ=255) ccGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaa < 1:5945031‑M1/49‑14 (MQ=255) ccGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaa < 1:4926841‑M1/49‑14 (MQ=255) gAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataa < 1:3460123‑M1/50‑17 (MQ=255) aGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaa < 1:1201450‑M1/50‑18 (MQ=255) aGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaa < 1:784181‑M1/50‑18 (MQ=255) aGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaa < 1:4498532‑M1/50‑18 (MQ=255) aGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaata > 1:2643506‑M1/1‑33 (MQ=255) aGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaata > 1:4264788‑M1/1‑33 (MQ=255) gTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaag < 1:103525‑M1/50‑19 (MQ=255) tCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaaga < 1:3247093‑M1/50‑20 (MQ=255) tCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaaga < 1:613598‑M1/50‑20 (MQ=255) tCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaata > 1:4363845‑M1/1‑31 (MQ=255) ccTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaaga > 1:4079228‑M1/1‑30 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagata < 1:1351888‑M1/50‑22 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagata < 1:3241521‑M1/50‑22 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagata < 1:1353279‑M1/50‑22 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagat > 1:5054220‑M1/1‑29 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagat < 1:1495683‑M1/49‑21 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatg > 1:930196‑M1/1‑26 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatg > 1:642090‑M1/1‑26 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataat < 1:3605055‑M1/49‑24 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataat < 1:4884119‑M1/49‑24 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataa < 1:3350145‑M1/48‑23 (MQ=255) gtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatg < 1:2919794‑M1/49‑25 (MQ=255) tgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgca < 1:5219202‑M1/50‑27 (MQ=255) tgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgca < 1:1226834‑M1/50‑27 (MQ=255) tgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgca > 1:557404‑M1/1‑24 (MQ=255) tgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgc < 1:1002423‑M1/49‑26 (MQ=255) tgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgc < 1:2275106‑M1/49‑26 (MQ=255) tgCGAGGAAAAATATCAGTATGGCtcaatgatcaaaataaagataatgc < 1:840129‑M1/49‑26 (MQ=255) cGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc < 1:2239701‑M1/50‑29 (MQ=255) cGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcat < 1:1975115‑M1/49‑28 (MQ=255) gAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatcc < 1:1149806‑M1/50‑30 (MQ=255) gAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatcc < 1:3361131‑M1/50‑30 (MQ=255) gAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc > 1:5699796‑M1/1‑21 (MQ=255) gAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc > 1:1175000‑M1/1‑21 (MQ=255) aGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatcca < 1:5613195‑M1/50‑31 (MQ=255) aGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatcca < 1:5624366‑M1/50‑31 (MQ=255) aGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatcca < 1:5961778‑M1/50‑31 (MQ=255) aGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatcca < 1:952018‑M1/50‑31 (MQ=255) ggAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatccag < 1:4831300‑M1/50‑32 (MQ=255) ggAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatccag < 1:5976335‑M1/50‑32 (MQ=255) gAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatccagc > 1:5092359‑M1/1‑18 (MQ=255) gAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatccagc < 1:3899407‑M1/50‑33 (MQ=255) gAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatccagc < 1:1269936‑M1/50‑33 (MQ=255) aaaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagct > 1:2715060‑M1/1‑17 (MQ=255) aaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctg > 1:2216275‑M1/1‑16 (MQ=255) aaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctg < 1:4667615‑M1/50‑35 (MQ=255) aaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctgg > 1:5015869‑M1/1‑15 (MQ=255) aaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctggt > 1:2865241‑M1/1‑14 (MQ=255) aaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctggt < 1:4793418‑M1/50‑37 (MQ=255) atatCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtc < 1:1497916‑M1/50‑38 (MQ=255) atatCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtc < 1:673221‑M1/50‑38 (MQ=255) atatCAGTATGGCtcaatgatccaaataaagataatgcatccagctggt > 1:768641‑M1/1‑13 (MQ=255) atCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcat > 1:191758‑M1/1‑11 (MQ=255) tCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcatt > 1:4549191‑M1/1‑10 (MQ=255) tCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcatt < 1:928323‑M1/50‑41 (MQ=255) tCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcat < 1:3468194‑M1/49‑40 (MQ=255) aGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattct > 1:2592987‑M1/1‑8 (MQ=255) aGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattc < 1:1169768‑M1/49‑42 (MQ=255) aGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattc < 1:2798222‑M1/49‑42 (MQ=255) gTATGGCtcaatgatccaaataaagataatgcatccagctggtcattctt < 1:4306492‑M1/50‑44 (MQ=255) gTATGGCtcaatgatccaaataaagataatgcatccagctggtcattctt < 1:3958968‑M1/50‑44 (MQ=255) gTATGGCtcaatgatccaaataaagataatgcatccagctggtcattctt < 1:87473‑M1/50‑44 (MQ=255) gTATGGCtcaatgatccaaataaagataatgcatccagctggtcattct > 1:2535258‑M1/1‑7 (MQ=255) tATGGCtcaatgatccaaataaagataatgcatccagctggtcattctta < 1:5567229‑M1/50‑45 (MQ=255) tATGGCtcaatgatccaaataaagataatgcatccagctggtcattctta < 1:5253277‑M1/50‑45 (MQ=255) aTGGCtcaatgatccaaataaagataatgcatccagctggtcattcttag > 1:901053‑M1/1‑5 (MQ=255) tGGCtcaatgatccaaataaagataatgcatccagctggtcattcttag > 1:588562‑M1/1‑4 (MQ=255) ggCtcaatgatccaaataaagataatgcatccagctggtcattcttag > 1:2161368‑M1/1‑3 (MQ=255) gCtcaatgatccaaataaagataatgcatccagctggtcattcttagcag < 1:3788623‑M1/50‑49 (MQ=255) gCtcaatgatccaaataaagataatgcatccagctggtcattcttagcag > 1:5452859‑M1/1‑2 (MQ=255) gCtcaatgatccaaataaagataatgcatccagctggtcattcttagcag > 1:2344290‑M1/1‑2 (MQ=255) gCtcaatgatccaaataaagataatgcatccagctggtcattcttagca < 1:612445‑M1/49‑48 (MQ=255) gCtcaatgatccaaataaagataatgcatccagctggtcattcttagca < 1:4515531‑M1/49‑48 (MQ=255) ctcaatgatccaaataaagataatgcatccagctggtcattcttagcag > 1:3581720‑M1/1‑1 (MQ=255) ctcaatgatccaaataaagataatgcatccagctggtcattcttagcag > 1:5469235‑M1/1‑1 (MQ=255) | CGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCA > NC_000913/3761943‑3762040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |