| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,761,993 | Δ8,250 bp | rhsA–yibV | rhsA, yibA, yibJ, yibG, yibS, yibV | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3761993 | 3770242 | 8250 | 121 [0] | [0] 119 | rhsA–yibV | rhsA,yibA,yibJ,yibG,yibS,yibV |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3761992 | 0 (0.000) | 116 (1.490) | 67/96 | 0.0 | 100% | intergenic (‑37/‑191) | yibF/rhsA | glutathione transferase‑like protein YibF/rhs element protein RhsA |
| ? | NC_000913 | 3770243 = | 0 (0.000) | coding (1137/1137 nt) | yibH | inner membrane protein YibH | |||||
Only 100 of 119 total aligned reads displayed.
ATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCA > NC_000913/3770194‑3770292 | gacgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggct < 1:3146554‑M2/1‑1 (MQ=255)gacgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggct < 1:5370395‑M2/1‑1 (MQ=255) acgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggct > 1:4985468‑M2/49‑49 (MQ=255) cgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTc > 1:3090891‑M2/48‑49 (MQ=255) gagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCaa > 1:4447116‑M2/47‑50 (MQ=255) agtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAAt < 1:2703805‑M2/5‑1 (MQ=255) gtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATg < 1:5306888‑M2/6‑1 (MQ=255) tttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGa < 1:4461958‑M2/7‑1 (MQ=255) tcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGAt < 1:813221‑M2/8‑1 (MQ=255) tcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGAt < 1:4279135‑M2/8‑1 (MQ=255) tcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGAt < 1:1381093‑M2/8‑1 (MQ=255) tcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATc > 1:5030762‑M2/42‑50 (MQ=255) atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATcc > 1:4747259‑M2/40‑49 (MQ=255) atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCa < 1:1625037‑M2/11‑1 (MQ=255) atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCa < 1:3657773‑M2/11‑1 (MQ=255) ccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCaaa < 1:4926841‑M2/13‑1 (MQ=255) ccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCaaa < 1:5269809‑M2/13‑1 (MQ=255) ccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCaaa < 1:5945031‑M2/13‑1 (MQ=255) ccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAAt < 1:5744146‑M2/14‑1 (MQ=255) ccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAAt < 1:340195‑M2/14‑1 (MQ=255) agtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATaaa < 1:4498532‑M2/17‑1 (MQ=255) agtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATaaa < 1:784181‑M2/17‑1 (MQ=255) agtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATa > 1:4264788‑M2/34‑48 (MQ=255) agtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATa > 1:2643506‑M2/34‑48 (MQ=255) gtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAg < 1:5395315‑M2/18‑1 (MQ=255) gtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAg < 1:103525‑M2/18‑1 (MQ=255) tcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATa > 1:4363845‑M2/32‑46 (MQ=255) tcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAagg < 1:77655‑M2/19‑2 (MQ=255) tcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa < 1:3247093‑M2/19‑1 (MQ=255) tcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa < 1:613598‑M2/19‑1 (MQ=255) cctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa > 1:5575886‑M2/31‑49 (MQ=255) cctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa > 1:4079228‑M2/31‑49 (MQ=255) ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGAt > 1:5054220‑M2/30‑49 (MQ=255) ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATa < 1:1353279‑M2/21‑1 (MQ=255) ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATa < 1:1351888‑M2/21‑1 (MQ=255) tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATaa < 1:2286000‑M2/22‑1 (MQ=255) tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATaa < 1:3350145‑M2/22‑1 (MQ=255) tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAAt < 1:4884119‑M2/23‑1 (MQ=255) tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAAt < 1:3605055‑M2/23‑1 (MQ=255) tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg > 1:642090‑M2/27‑50 (MQ=255) tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg > 1:930196‑M2/27‑50 (MQ=255) gtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg < 1:2919794‑M2/24‑1 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGc < 1:1002423‑M2/25‑1 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGc < 1:2275106‑M2/25‑1 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCa < 1:1226834‑M2/26‑1 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCa > 1:557404‑M2/25‑50 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCAAAATAAAGATAATGc < 1:840129‑M2/25‑1 (MQ=255) gcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCAt > 1:3350414‑M2/24‑50 (MQ=255) cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCAt < 1:1975115‑M2/27‑1 (MQ=255) cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc < 1:2239701‑M2/28‑1 (MQ=255) gaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATcc < 1:1149806‑M2/29‑1 (MQ=255) gaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATcc < 1:3498725‑M2/29‑1 (MQ=255) gaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATcc < 1:3361131‑M2/29‑1 (MQ=255) gaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc > 1:5699796‑M2/22‑49 (MQ=255) gaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc > 1:1175000‑M2/22‑49 (MQ=255) aggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCa < 1:5624366‑M2/30‑1 (MQ=255) aggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCa < 1:952018‑M2/30‑1 (MQ=255) ggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAg < 1:5976335‑M2/31‑1 (MQ=255) ggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAg < 1:4831300‑M2/31‑1 (MQ=255) gaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGc < 1:3899407‑M2/32‑1 (MQ=255) gaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGc < 1:1269936‑M2/32‑1 (MQ=255) gaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGc > 1:5092359‑M2/19‑50 (MQ=255) aaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCt < 1:5858062‑M2/33‑1 (MQ=255) aaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCt < 1:5002197‑M2/33‑1 (MQ=255) aaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCt > 1:2715060‑M2/18‑50 (MQ=255) aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg > 1:2216275‑M2/17‑50 (MQ=255) aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg < 1:5201918‑M2/34‑1 (MQ=255) aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg < 1:4667615‑M2/34‑1 (MQ=255) aaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTgg > 1:5015869‑M2/16‑50 (MQ=255) aatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt > 1:2865241‑M2/15‑50 (MQ=255) aatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt > 1:1192376‑M2/15‑50 (MQ=255) aatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt < 1:4793418‑M2/36‑1 (MQ=255) atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt > 1:768641‑M2/14‑49 (MQ=255) atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt > 1:610173‑M2/14‑49 (MQ=255) atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTc < 1:1497916‑M2/37‑1 (MQ=255) atcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt > 1:191758‑M2/12‑50 (MQ=255) tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAtt < 1:928323‑M2/40‑1 (MQ=255) tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAtt < 1:267922‑M2/40‑1 (MQ=255) tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAtt > 1:4549191‑M2/11‑50 (MQ=255) tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt < 1:3468194‑M2/39‑1 (MQ=255) agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTc < 1:1169768‑M2/41‑1 (MQ=255) agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt > 1:2592987‑M2/9‑50 (MQ=255) gtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCtt < 1:3958968‑M2/43‑1 (MQ=255) gtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCtt < 1:87473‑M2/43‑1 (MQ=255) gtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCtt < 1:4306492‑M2/43‑1 (MQ=255) tatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTa < 1:5567229‑M2/44‑1 (MQ=255) tatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTa < 1:5253277‑M2/44‑1 (MQ=255) atggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag > 1:901053‑M2/6‑50 (MQ=255) tggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag > 1:588562‑M2/5‑49 (MQ=255) ggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag > 1:2161368‑M2/4‑48 (MQ=255) ggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag > 1:2042525‑M2/4‑48 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag < 1:3788623‑M2/48‑1 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag > 1:2344290‑M2/3‑50 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag > 1:5452859‑M2/3‑50 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag < 1:2977175‑M2/48‑1 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagca < 1:612445‑M2/47‑1 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagca < 1:4515531‑M2/47‑1 (MQ=255) cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag > 1:3581720‑M2/2‑49 (MQ=255) cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag > 1:5469235‑M2/2‑49 (MQ=255) tcAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAgcagca > 1:4894878/1‑50 (MQ=255) | ATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCA > NC_000913/3770194‑3770292 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |