BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,720,634	Δ1,442 bp	IS150‑mediated	insJ–insK	insJ, insK

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3720634	3722075	1442	170 [0]	[0] 169	insJ–insK	insJ,insK

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3720633	0 (0.000)	167 (2.100)	70/98	0.0	100%	noncoding (1/1443 nt)	IS150	repeat region
*	?	NC_000913	3722076 =	0 (0.000)	167 (2.100)	70/98	0.0	100%	intergenic (+27/+252)	insK/glyS	IS150 conserved protein InsB/glycine‑‑tRNA ligase subunit beta

Only 100 of 170 total aligned reads displayed.

CTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATG  >  NC_000913/3720584‑3720682

 tataTTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa                                                 >  1:2964892‑M1/1‑48 (MQ=255)

 tataTTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa                                                 >  1:2854330‑M1/1‑48 (MQ=255)

 tataTTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa                                                 >  1:3996553‑M1/1‑48 (MQ=255)

  atatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaac                                                >  1:3034246‑M1/1‑47 (MQ=255)

  atatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaac                                                >  1:2633887‑M1/1‑47 (MQ=255)

  atatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaac                                                >  1:5679360‑M1/1‑47 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                                   <  1:5840684/46‑1 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaact                                               >  1:1860800‑M1/1‑46 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaact                                               <  1:2712616‑M1/50‑5 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaact                                               >  1:2528105‑M1/1‑46 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa                                                 <  1:4516651‑M1/48‑3 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATa                                                  <  1:6038794‑M1/47‑2 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATa                                                  <  1:4880530‑M1/47‑2 (MQ=255)

    atTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactt                                              >  1:4045709‑M1/1‑45 (MQ=255)

     tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt                                             <  1:574192‑M1/50‑7 (MQ=255)

     tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt                                             <  1:5135726‑M1/50‑7 (MQ=255)

     tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactt                                              <  1:3007151‑M1/49‑6 (MQ=255)

      ttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt                                             >  1:1034654‑M1/1‑43 (MQ=255)

       tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttga                                           >  1:124802‑M1/1‑42 (MQ=255)

       tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttga                                           >  1:4408072‑M1/1‑42 (MQ=255)

       tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttga                                           >  1:707931‑M1/1‑42 (MQ=255)

       tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttg                                            <  1:603645‑M1/49‑8 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       >  1:4320334‑M1/2‑38 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       >  1:4147362‑M1/2‑38 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       <  1:401490‑M1/49‑13 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattt                                        <  1:3957155‑M1/48‑12 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatt                                         <  1:1745004‑M1/47‑11 (MQ=255)

             gCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttat                                      <  1:3522060‑M1/50‑14 (MQ=255)

             gCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       >  1:5008804‑M1/1‑37 (MQ=255)

             gCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       >  1:5433476‑M1/1‑37 (MQ=255)

              cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttata                                     <  1:200838‑M1/50‑15 (MQ=255)

              cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttata                                     <  1:1442677‑M1/50‑15 (MQ=255)

              cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       >  1:937197‑M1/1‑36 (MQ=255)

              cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       >  1:4841605‑M1/1‑36 (MQ=255)

               aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatag                                    <  1:3502764‑M1/50‑16 (MQ=255)

               aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatag                                    <  1:1058295‑M1/50‑16 (MQ=255)

               aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatag                                    >  1:2519767‑M1/1‑35 (MQ=255)

                ttCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagt                                   <  1:2725521‑M1/50‑17 (MQ=255)

                ttCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagt                                   <  1:607221‑M1/50‑17 (MQ=255)

                 tCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagt                                   >  1:2933433‑M1/1‑33 (MQ=255)

                 tCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagt                                   >  1:3438359‑M1/1‑33 (MQ=255)

                  cccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtc                                  <  1:1669020‑M1/49‑18 (MQ=255)

                  cccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtc                                  <  1:2265969‑M1/49‑18 (MQ=255)

                  cccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtc                                  <  1:1363956‑M1/49‑18 (MQ=255)

                  cccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtc                                  <  1:2205002‑M1/49‑18 (MQ=255)

                  cccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagt                                   >  1:3556595‑M1/1‑32 (MQ=255)

                   ccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcag                                >  1:2505412‑M1/1‑31 (MQ=255)

                   ccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcag                                <  1:43880‑M1/50‑20 (MQ=255)

                   ccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcag                                >  1:1626180‑M1/1‑31 (MQ=255)

                   ccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtca                                 <  1:1600363‑M1/49‑19 (MQ=255)

                    cAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcagg                               >  1:3154067‑M1/1‑30 (MQ=255)

                     aGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggt                              >  1:4804097‑M1/1‑29 (MQ=255)

                     aGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggt                              <  1:4873692‑M1/50‑22 (MQ=255)

                     aGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggt                              <  1:3915492‑M1/50‑22 (MQ=255)

                     aGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggt                              <  1:3919670‑M1/50‑22 (MQ=255)

                       cctcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtgg                            <  1:6026194‑M1/50‑24 (MQ=255)

                       cctcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtgg                            >  1:4590024‑M1/1‑27 (MQ=255)

                       cctcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtgg                            <  1:4948467‑M1/50‑24 (MQ=255)

                        ctcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggg                           >  1:401988‑M1/1‑26 (MQ=255)

                        ctcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggg                           >  1:584546‑M1/1‑26 (MQ=255)

                        ctcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggg                           >  1:3680885‑M1/1‑26 (MQ=255)

                        ctcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggg                           >  1:2955426‑M1/1‑26 (MQ=255)

                         tcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtgggg                          >  1:5392209‑M1/1‑25 (MQ=255)

                         tcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtgggg                          >  1:892190‑M1/1‑25 (MQ=255)

                          cctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggggc                         >  1:3339082‑M1/1‑24 (MQ=255)

                           ctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggggct                        >  1:3584109‑M1/1‑23 (MQ=255)

                           ctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtgggg                          <  1:4582487‑M1/48‑26 (MQ=255)

                              tgtTGATTTCCAACGAGTATaactttgatttatagtcgggtggggctttt                     >  1:1430269‑M1/1‑20 (MQ=255)

                              tgtTGATTTCCAACGAGTATaactttgatttatagtcaggtggggctttt                     >  1:1595590‑M1/1‑20 (MQ=255)

                               gtTGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttttc                    >  1:1312766‑M1/1‑19 (MQ=255)

                                ttGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttttct                   >  1:3462505‑M1/1‑18 (MQ=255)

                                 tGATTTCCAACGAGTATaactctgatttatagtcaggtggggcttttctc                  >  1:323335‑M1/1‑17 (MQ=255)

                                   aTTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctctg                <  1:3628581‑M1/50‑36 (MQ=255)

                                    tttCCAACGAGTATaactttgatttatagtcaggtggggcttttctctgt               <  1:5674992‑M1/50‑37 (MQ=255)

                                       ccAACGAGTATaactttgatttatagtcaggtggggcttttctctgtctg            >  1:3829493‑M1/1‑11 (MQ=255)

                                        cAACGAGTATaactttgatttatagtcaggtggggcttttctctgtctgc           >  1:2852122‑M1/1‑10 (MQ=255)

                                        cAACGAGTATaactttgatttatagtcaggtggggcttttctctgtctgc           >  1:3615825‑M1/1‑10 (MQ=255)

                                        cAACGAGTATaactttgatttatagtcaggtggggcttttctctgtctgc           >  1:53291‑M1/1‑10 (MQ=255)

                                        cAACGAGTATaactttgatttatagtcaggtggggcttttctctgtctgc           <  1:3123189‑M1/50‑41 (MQ=255)

                                        cAACGAGTATaactttgatttatagtcaggtggggcttttctctgtctg            <  1:2761499‑M1/49‑40 (MQ=255)

                                        cAACGAGTATaactttgatttatagtcaggtggggcttttctctgtctg            <  1:2327303‑M1/49‑40 (MQ=255)

                                         aaCGAGTATaactttgatttatagtcaggtggggcttttctctgtctgcc          <  1:730444‑M1/50‑42 (MQ=255)

                                          aCGAGTATacctttgatttatagtcaggtggggcttttctctgtctgcct         <  1:558369‑M1/50‑43 (MQ=255)

                                          aCGAGTATaactttgatttatagtcaggtggggcttttctctgtctgcct         <  1:5657145‑M1/50‑43 (MQ=255)

                                           cGAGTATaactttgatttatagtcaggtggggcttttctctgtctgcctt        <  1:2388870‑M1/50‑44 (MQ=255)

                                           cGAGTATaactttgatttatagtcaggtggggcttttctctgtctgcctt        <  1:1904963‑M1/50‑44 (MQ=255)

                                           cGAGTATaactttgatttatagtcaggtggggcttttctctgtctgcctt        >  1:3068314‑M1/1‑7 (MQ=255)

                                            gAGTATaactttgatttatagtcaggtggggcttttctctgtctgccttt       >  1:4802067‑M1/1‑6 (MQ=255)

                                            gAGTATaactttgatttatagtcaggtggggcttttctctgtctgccttt       <  1:4237709‑M1/50‑45 (MQ=255)

                                            gAGTATaactttgatttatagtcaggtggggcttttctctgtctgccttt       >  1:2151074‑M1/1‑6 (MQ=255)

                                            gAGTATaactttgatttatagtcaggtggggcttttctctgtctgccttt       <  1:2703059‑M1/50‑45 (MQ=255)

                                              gTATaactttgatttatagtcaggtggggcttttctctgtctgcctttcg     >  1:1304967‑M1/1‑4 (MQ=255)

                                              gTATaactttgatttatagtcaggtggggcttttctctgtctgcctttcg     >  1:2134415‑M1/1‑4 (MQ=255)

                                              gTATaaccttgatttatagtcaggtggggcttttctctgtctgcctttcg     >  1:2062632‑M1/1‑4 (MQ=255)

                                               tataactttgatttatagtcaggtggggcttttctctgtctgcctttcgg    >  1:180466‑M1/1‑3 (MQ=255)

                                               tataactttgatttatagtcaggtggggcttttctctgtctgcctttcgg    >  1:1981373‑M1/1‑3 (MQ=255)

                                               tataactttgatttatagtcaggtggggcttttctctgtctgcctttcgg    <  1:4642118‑M1/50‑48 (MQ=255)

                                               tataactttgatttatagtcaggtggggcttttctctgtctgcctttcgg    <  1:3244985‑M1/50‑48 (MQ=255)

                                                 taactttgatttatagtcaggtggggcttttctctgtctgcctttcggtg  <  1:4654737‑M1/50‑50 (MQ=255)

                                                 taactttgatttatagtcaggtggggcttttctctgtctgcctttcggt   >  1:5811826‑M1/1‑1 (MQ=255)

CTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATG  >  NC_000913/3720584‑3720682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`