BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,601,201	Δ13,595 bp		[hyfA]–focB	[hyfA], hyfB, hyfC, hyfD, hyfE, hyfF, hyfG, hyfH, hyfI, hyfJ, hyfR, focB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2601201	2614795	13595	99 [0]	[0] 103	[hyfA]–focB	[hyfA],hyfB,hyfC,hyfD,hyfE,hyfF,hyfG,hyfH,hyfI,hyfJ,hyfR,focB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2601200	0 (0.000)	97 (1.220)	58/98	0.0	100%	intergenic (+252/‑1)	bcp/hyfA	thiol peroxidase/hydrogenase 4 component A
*	?	NC_000913	2614796 =	0 (0.000)	97 (1.220)	58/98	0.0	100%	intergenic (+14/+24)	focB/yfgO	putative formate transporter/putative transporter YfgO

Only 100 of 103 total aligned reads displayed.

TGTTATCGGGCTATTTATTTACGTCAGGAACCCTGAAAAATCAGCCCGGCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATCGG  >  NC_000913/2614747‑2614845

tttatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacc                                                   >  1:4117774‑M2/50‑50 (MQ=255)

 ttatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacc                                                   >  1:607515‑M2/49‑49 (MQ=255)

  tatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgaccg                                                  <  1:5561947‑M2/2‑1 (MQ=255)

    tgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacCGaaa                                               <  1:3265384‑M2/5‑1 (MQ=255)

    tgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacCGaaa                                               >  1:2531409‑M2/46‑50 (MQ=255)

    tgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacCGaa                                                <  1:4765125‑M2/4‑1 (MQ=255)

    tgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacCGaa                                                <  1:3164244‑M2/4‑1 (MQ=255)

      caatatgaaatgcaatgtttcatatcattttcaaggagccgacCGaaa                                               >  1:690242‑M2/44‑48 (MQ=255)

      caatatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACa                                             <  1:2365165‑M2/7‑1 (MQ=255)

       aatatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAg                                            <  1:5602351‑M2/8‑1 (MQ=255)

       aatatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAg                                            <  1:4074476‑M2/8‑1 (MQ=255)

        atatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGt                                           >  1:824362‑M2/42‑50 (MQ=255)

         tatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGtt                                          <  1:966959‑M2/10‑1 (MQ=255)

         tatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGtt                                          <  1:2333281‑M2/10‑1 (MQ=255)

          atgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtc                                         >  1:3691649‑M2/40‑50 (MQ=255)

           tgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcg                                        >  1:3951086‑M2/39‑50 (MQ=255)

           tgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcg                                        >  1:4637170‑M2/39‑50 (MQ=255)

           tgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcg                                        >  1:68215‑M2/39‑50 (MQ=255)

           tgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtc                                         <  1:2819185‑M2/11‑1 (MQ=255)

           tgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtc                                         <  1:259467‑M2/11‑1 (MQ=255)

             aaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtc                                      <  1:4590219‑M2/14‑1 (MQ=255)

             aaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtc                                      >  1:4051773‑M2/37‑50 (MQ=255)

             aaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtc                                      >  1:2960880‑M2/37‑50 (MQ=255)

             aaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtc                                      >  1:5373747‑M2/37‑50 (MQ=255)

             aaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgt                                       <  1:3832652‑M2/13‑1 (MQ=255)

              aatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtcg                                     <  1:882807‑M2/15‑1 (MQ=255)

              aatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtcg                                     >  1:139235‑M2/36‑50 (MQ=255)

              aatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtcg                                     <  1:3300461‑M2/15‑1 (MQ=255)

              aatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtcg                                     <  1:4132775‑M2/15‑1 (MQ=255)

              aatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtcg                                     >  1:2708023‑M2/36‑50 (MQ=255)

              aatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtcg                                     >  1:1952861‑M2/36‑50 (MQ=255)

               atgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCgg                                    <  1:4441418‑M2/16‑1 (MQ=255)

               atgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCgg                                    <  1:958611‑M2/16‑1 (MQ=255)

               atgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCgg                                    >  1:5655957‑M2/35‑50 (MQ=255)

               atgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCgg                                    <  1:4814993‑M2/16‑1 (MQ=255)

                tgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCggg                                   >  1:5210765‑M2/34‑50 (MQ=255)

                 gcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGc                                  >  1:945405‑M2/33‑50 (MQ=255)

                  caatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCt                                 >  1:4364316‑M2/32‑50 (MQ=255)

                  caatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCt                                 <  1:4054328‑M2/19‑1 (MQ=255)

                  caatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCt                                 <  1:4866104‑M2/19‑1 (MQ=255)

                   aatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCt                                 >  1:4024895‑M2/31‑49 (MQ=255)

                    atgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTg                                >  1:2949995‑M2/30‑49 (MQ=255)

                       tttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAg                             <  1:2012286‑M2/23‑1 (MQ=255)

                       tttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGa                            <  1:2778294‑M2/24‑1 (MQ=255)

                        ttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGat                           >  1:2367629‑M2/26‑50 (MQ=255)

                        ttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGat                           >  1:2588991‑M2/26‑50 (MQ=255)

                        ttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGat                           >  1:71732‑M2/26‑50 (MQ=255)

                        ttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGat                           >  1:773561‑M2/26‑50 (MQ=255)

                        ttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGat                           >  1:3898660‑M2/26‑50 (MQ=255)

                         tcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGat                           >  1:912494‑M2/25‑49 (MQ=255)

                          catatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGatta                         >  1:3950447‑M2/24‑50 (MQ=255)

                          catatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGatta                         >  1:4889459‑M2/24‑50 (MQ=255)

                           atatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGattat                        >  1:5971863‑M2/23‑50 (MQ=255)

                           atatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGattat                        >  1:4504012‑M2/23‑50 (MQ=255)

                           atatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGattat                        >  1:3604412‑M2/23‑50 (MQ=255)

                            tatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGattatt                       >  1:1943687‑M2/22‑50 (MQ=255)

                            tatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGattatt                       >  1:2893648‑M2/22‑50 (MQ=255)

                              tcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCt                     <  1:5729572‑M2/31‑1 (MQ=255)

                              tcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCt                     <  1:5382417‑M2/31‑1 (MQ=255)

                              tcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCt                     <  1:5283679‑M2/31‑1 (MQ=255)

                              tcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCt                     <  1:2470916‑M2/31‑1 (MQ=255)

                               cattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCtt                    >  1:777063‑M2/19‑50 (MQ=255)

                               cattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCtt                    >  1:1535538‑M2/19‑50 (MQ=255)

                                attttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCtt                    <  1:5352933‑M2/32‑1 (MQ=255)

                                attttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTg                   >  1:2781596‑M2/18‑50 (MQ=255)

                                attttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTg                   <  1:1789120‑M2/33‑1 (MQ=255)

                                 ttttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgc                  <  1:3480517‑M2/34‑1 (MQ=255)

                                   ttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgcg                 <  1:5775504‑M2/35‑1 (MQ=255)

                                    tcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgcgc                >  1:3963174‑M2/14‑49 (MQ=255)

                                    tcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgcgc                >  1:1774099‑M2/14‑49 (MQ=255)

                                     caaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGa              >  1:2025377‑M2/13‑50 (MQ=255)

                                       aggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGAtt            <  1:5374903‑M2/40‑1 (MQ=255)

                                       aggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGAtt            <  1:583328‑M2/40‑1 (MQ=255)

                                       aggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGAtt            <  1:2396841‑M2/40‑1 (MQ=255)

                                        ggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGAttt           >  1:2676644‑M2/10‑50 (MQ=255)

                                        ggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGAttt           <  1:936894‑M2/41‑1 (MQ=255)

                                        ggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGAttt           <  1:6034130‑M2/41‑1 (MQ=255)

                                         gagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTg          >  1:5273649‑M2/9‑50 (MQ=255)

                                          agccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGc         <  1:5315352‑M2/43‑1 (MQ=255)

                                          agccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGc         >  1:1479608‑M2/8‑50 (MQ=255)

                                           gccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGcc        <  1:4732070‑M2/44‑1 (MQ=255)

                                            ccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGccc       <  1:4440564‑M2/45‑1 (MQ=255)

                                            ccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGccc       <  1:1286357‑M2/45‑1 (MQ=255)

                                            ccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGccc       <  1:1294070‑M2/45‑1 (MQ=255)

                                             cgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCa      >  1:4933227‑M2/5‑50 (MQ=255)

                                             cgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCa      >  1:3875442‑M2/5‑50 (MQ=255)

                                             cgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGACTTGCCCa      >  1:3957117‑M2/5‑50 (MQ=255)

                                              gacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCAt     >  1:4796532‑M2/4‑50 (MQ=255)

                                              gacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCAt     >  1:3457384‑M2/4‑50 (MQ=255)

                                              gacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCAt     <  1:2256150‑M2/47‑1 (MQ=255)

                                               acCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATc    >  1:5771989‑M2/3‑50 (MQ=255)

                                               acCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATc    <  1:5603422‑M2/48‑1 (MQ=255)

                                               acCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATc    <  1:1487574‑M2/48‑1 (MQ=255)

                                                cCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATCg   <  1:1381313‑M2/49‑1 (MQ=255)

                                                 cGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATCgg  <  1:1095779/50‑1 (MQ=255)

                                                 cGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATCgg  >  1:5790671/1‑50 (MQ=255)

                                                 cGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATCgg  >  1:5512749/1‑50 (MQ=255)

                                                 cGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATCgg  <  1:4469712/50‑1 (MQ=255)

                                                 cGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATCgg  <  1:3160310/50‑1 (MQ=255)

                                                 cGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATCgg  <  1:2327166/50‑1 (MQ=255)

TGTTATCGGGCTATTTATTTACGTCAGGAACCCTGAAAAATCAGCCCGGCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATCGG  >  NC_000913/2614747‑2614845

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`