| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,286,401 | Δ3,780 bp | [yejO]–[yejO] | [yejO], insH‑8, [yejO] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2286401 | 2290180 | 3780 | 63 [0] | [0] 64 | [yejO]–[yejO] | [yejO],insH‑8,[yejO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2286400 | 0 (0.000) | 63 (1.230) | 48/98 | 0.0 | 100% | pseudogene (2515/2525 nt) | yejO | adhesin‑like autotransporter YejO |
| ? | NC_000913 | 2290181 = | 0 (0.000) | intergenic (‑1/‑319) | yejO/narP | adhesin‑like autotransporter YejO/DNA‑binding transcriptional dual regulator NarP | |||||
AGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2286353‑2286400‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAG > NC_000913/2290181‑2290229 AGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCT > 1:1827939/1‑49 GACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGA < 1:1780650/50‑1 GACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCT > 1:2475280/1‑48 CCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGC > 1:780116/1‑50 CCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGC < 1:1424684/50‑1 CCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGC > 1:2718044/1‑50 GTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTT < 1:2648084/50‑1 GTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTT > 1:310701/1‑50 ACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCA < 1:1686752/50‑1 CATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCC > 1:3380235/1‑50 ATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCC > 1:2470305/1‑49 ATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCC > 1:2674542/1‑49 ATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCC > 1:1070175/1‑49 ACAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTAT < 1:3242653/49‑1 CAGCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATG > 1:312258/1‑49 GCCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAA < 1:1554841/50‑1 CCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAAT < 1:2846877/50‑1 CCTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAAT > 1:3833302/1‑50 CTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATT < 1:2003337/50‑1 CTGTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATT < 1:62114/50‑1 GTTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAA > 1:2012499/1‑50 TTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAAT > 1:3234678/1‑50 TTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAAT > 1:2654175/1‑50 TTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAAT > 1:1075271/1‑50 TTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAAT < 1:2169453/50‑1 TTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAAT > 1:159655/1‑50 TTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAA < 1:3890416/49‑1 TTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTA < 1:61927/48‑1 TTTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTA < 1:1826374/48‑1 TTATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATT > 1:180771/1‑50 ATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGC > 1:3836446/1‑50 ATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGC > 1:2792091/1‑50 ATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTG < 1:2557273/49‑1 ATTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTG < 1:2041162/49‑1 TTTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCT > 1:1334527/1‑50 TTTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTG > 1:2800/1‑50 TTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGT > 1:334218/1‑50 TTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTG < 1:2132322/49‑1 TTCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTG < 1:1360876/49‑1 TCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGT > 1:2894403/1‑49 TCTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGT < 1:1350100/49‑1 CTGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTT > 1:501519/1‑49 TGTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTA > 1:1560794/1‑49 GTTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAA > 1:3818412/1‑49 TTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAA < 1:740634/50‑1 TTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAA < 1:2459941/50‑1 TTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAA < 1:3191107/49‑1 TTATCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAA < 1:3932774/48‑1 TCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCA > 1:3134879/1‑50 TCAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCA < 1:452870/50‑1 CAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAT > 1:964177/1‑50 CAGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAT > 1:298822/1‑50 AGAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAT < 1:3875389/49‑1 GAACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTG < 1:1629609/50‑1 AACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGG < 1:2663563/50‑1 ACGTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGG > 1:779706/1‑50 GTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTA < 1:3273019/50‑1 GTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTA > 1:2494971/1‑50 GTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTA < 1:1080442/50‑1 GTCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTA > 1:842460/1‑50 TCCTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTAC < 1:2308800/50‑1 CTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAG < 1:928906/50‑1 CTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACA < 1:1533894/49‑1 AGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2286353‑2286400‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAG > NC_000913/2290181‑2290229 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |