| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,286,401 | Δ3,780 bp | [yejO]–[yejO] | [yejO], insH‑8, [yejO] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2286401 | 2290180 | 3780 | 63 [0] | [0] 64 | [yejO]–[yejO] | [yejO],insH‑8,[yejO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2286400 | 0 (0.000) | 63 (1.230) | 48/98 | 0.0 | 100% | pseudogene (2515/2525 nt) | yejO | adhesin‑like autotransporter YejO |
| ? | NC_000913 | 2290181 = | 0 (0.000) | intergenic (‑1/‑319) | yejO/narP | adhesin‑like autotransporter YejO/DNA‑binding transcriptional dual regulator NarP | |||||
AACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAG > NC_000913/2290133‑2290229 | agaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct > 1:1827939‑M2/49‑49 (MQ=255) gaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct > 1:2475280‑M2/48‑48 (MQ=255) gaccgtgacacatcacagcctgtttattttctgttatcagaacgtccTGa < 1:1780650‑M2/3‑1 (MQ=255) ccgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGc > 1:780116‑M2/46‑50 (MQ=255) ccgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGc < 1:1424684‑M2/5‑1 (MQ=255) ccgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGc > 1:2718044‑M2/46‑50 (MQ=255) gtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCtt < 1:2648084‑M2/7‑1 (MQ=255) gtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCtt > 1:310701‑M2/44‑50 (MQ=255) acacatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCa < 1:1686752‑M2/10‑1 (MQ=255) catcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATcc > 1:3380235‑M2/38‑50 (MQ=255) atcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATcc > 1:2470305‑M2/37‑49 (MQ=255) atcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATcc > 1:2674542‑M2/37‑49 (MQ=255) atcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATcc > 1:1070175‑M2/37‑49 (MQ=255) acagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTAt < 1:3242653‑M2/16‑1 (MQ=255) cagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATg > 1:312258‑M2/33‑49 (MQ=255) gcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGaaa < 1:1554841‑M2/20‑1 (MQ=255) cctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaat < 1:2846877‑M2/21‑1 (MQ=255) cctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaat > 1:3833302‑M2/30‑50 (MQ=255) ctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaatt < 1:2003337‑M2/22‑1 (MQ=255) ctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaatt < 1:62114‑M2/22‑1 (MQ=255) gtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaa > 1:2012499‑M2/27‑50 (MQ=255) tttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaat > 1:3234678‑M2/26‑50 (MQ=255) tttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaat > 1:2654175‑M2/26‑50 (MQ=255) tttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaat > 1:1075271‑M2/26‑50 (MQ=255) tttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaat > 1:159655‑M2/26‑50 (MQ=255) tttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaat < 1:2169453‑M2/25‑1 (MQ=255) tttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaa < 1:3890416‑M2/24‑1 (MQ=255) tttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaatta < 1:61927‑M2/23‑1 (MQ=255) tttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaatta < 1:1826374‑M2/23‑1 (MQ=255) ttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaatt > 1:180771‑M2/25‑50 (MQ=255) attttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTg < 1:2557273‑M2/27‑1 (MQ=255) attttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTg < 1:2041162‑M2/27‑1 (MQ=255) attttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGc > 1:2792091‑M2/23‑50 (MQ=255) attttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGc > 1:3836446‑M2/23‑50 (MQ=255) ttttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCt > 1:1334527‑M2/22‑50 (MQ=255) tttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTg > 1:2800‑M2/21‑50 (MQ=255) ttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTg < 1:2132322‑M2/30‑1 (MQ=255) ttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTg < 1:1360876‑M2/30‑1 (MQ=255) ttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGt > 1:334218‑M2/20‑50 (MQ=255) tctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGt > 1:2894403‑M2/19‑49 (MQ=255) tctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGt < 1:1350100‑M2/31‑1 (MQ=255) ctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGtt > 1:501519‑M2/18‑49 (MQ=255) tgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTa > 1:1560794‑M2/17‑49 (MQ=255) gttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaa > 1:3818412‑M2/16‑49 (MQ=255) ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaaa < 1:2459941‑M2/36‑1 (MQ=255) ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaaa < 1:740634‑M2/36‑1 (MQ=255) ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaa < 1:3191107‑M2/35‑1 (MQ=255) ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaa < 1:3932774‑M2/34‑1 (MQ=255) tcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCa > 1:3134879‑M2/12‑50 (MQ=255) tcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCa < 1:452870‑M2/39‑1 (MQ=255) cagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAt > 1:964177‑M2/11‑50 (MQ=255) cagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAt > 1:298822‑M2/11‑50 (MQ=255) agaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAt < 1:3875389‑M2/40‑1 (MQ=255) gaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTg < 1:1629609‑M2/42‑1 (MQ=255) aacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTgg < 1:2663563‑M2/43‑1 (MQ=255) acgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTggg > 1:779706‑M2/7‑50 (MQ=255) gtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa < 1:1080442‑M2/46‑1 (MQ=255) gtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa > 1:842460‑M2/5‑50 (MQ=255) gtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa < 1:3273019‑M2/46‑1 (MQ=255) gtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa > 1:2494971‑M2/5‑50 (MQ=255) tccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTAc < 1:2308800‑M2/47‑1 (MQ=255) cTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACa < 1:1533894‑M2/48‑1 (MQ=255) cTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAg < 1:928906‑M2/49‑1 (MQ=255) tGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAg > 1:871330/1‑49 (MQ=255) | AACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAG > NC_000913/2290133‑2290229 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |