| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,509,631 | Δ8,319 bp | [yfeO]–pdeA | [yfeO], ypeC, mntH, nupC, insL‑3, pdeA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2509631 | 2517949 | 8319 | 42 [0] | [0] 42 | [yfeO]–pdeA | [yfeO],ypeC,mntH,nupC,insL‑3,pdeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2509630 | 0 (0.000) | 41 (0.800) | 34/98 | 0.1 | 100% | coding (1/1257 nt) | yfeO | putative transport protein YfeO |
| ? | NC_000913 | 2517950 = | 0 (0.000) | intergenic (‑118/+91) | pdeA/alaX | putative c‑di‑GMP phosphodiesterase PdeA/tRNA‑Ala | |||||
GCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2509584‑2509630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAG > NC_000913/2517950‑2517998 GCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAG > 1:1165764/1‑50 AAGCTGGGCAAACTAAGTATCTGACCCCGCCTAAGGAATAGAACACAGGC > 1:1324663/1‑50 AGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCG < 1:523325/50‑1 GCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGG > 1:2945353/1‑50 GGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCA < 1:3640162/48‑1 CAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAA > 1:1136174/1‑50 CAAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAA > 1:2503675/1‑50 AAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAAC < 1:1535325/50‑1 AAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAAC < 1:1868628/50‑1 AAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAAC > 1:1073027/1‑50 AAACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAAC > 1:466833/1‑50 ACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCC < 1:588384/50‑1 ACTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCC > 1:530485/1‑50 CTAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCG > 1:732334/1‑50 TAAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCG > 1:3510752/1‑49 AAGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGA > 1:3271289/1‑50 AGTATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGAC < 1:1064386/50‑1 TATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGT < 1:302132/50‑1 TATCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACG > 1:342008/1‑49 TCTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTA < 1:1201401/49‑1 CTGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGA > 1:1849949/1‑50 TGACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGAC > 1:1314843/1‑50 ACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACT < 1:2034707/49‑1 ACCCCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGAC < 1:138018/48‑1 CCGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTAT > 1:3400253/1‑50 CGCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTAT > 1:3076021/1‑49 GCATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTA > 1:598214/1‑50 ATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTAC > 1:457951/1‑49 ATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTAC > 1:3004657/1‑49 ATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTAC > 1:502817/1‑49 ATAAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTAC > 1:1172088/1‑49 AAGGAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAA > 1:1455236/1‑49 GAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGC < 1:1863262/50‑1 GAATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGC > 1:771823/1‑50 AATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCG < 1:1591938/50‑1 ATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGG > 1:626689/1‑50 ATAGAACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGG > 1:847139/1‑50 AACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAA < 1:627785/50‑1 ACACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAA > 1:962675/1‑49 CACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAA > 1:3608509/1‑48 ACAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAG < 1:3876694/50‑1 GCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2509584‑2509630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAG > NC_000913/2517950‑2517998 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |