| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,509,631 | Δ8,319 bp | [yfeO]–pdeA | [yfeO], ypeC, mntH, nupC, insL‑3, pdeA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2509631 | 2517949 | 8319 | 42 [0] | [0] 42 | [yfeO]–pdeA | [yfeO],ypeC,mntH,nupC,insL‑3,pdeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2509630 | 0 (0.000) | 41 (0.800) | 34/98 | 0.1 | 100% | coding (1/1257 nt) | yfeO | putative transport protein YfeO |
| ? | NC_000913 | 2517950 = | 0 (0.000) | intergenic (‑118/+91) | pdeA/alaX | putative c‑di‑GMP phosphodiesterase PdeA/tRNA‑Ala | |||||
ACAGGGGGCCAGCCTGTTGCCGATTTTTCATCCAATGATGCTTTCACCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAGC > NC_000913/2517903‑2517999 | gcaagctgggcaaactaagtatctgaccccgcataaggaatagaacaCAg > 1:1165764‑M2/48‑50 (MQ=255) aagctgggcaaactaagtatctgaccccgcctaaggaatagaacaCAggc > 1:1324663‑M2/46‑50 (MQ=255) agctgggcaaactaagtatctgaccccgcataaggaatagaacaCAggcg < 1:523325‑M2/6‑1 (MQ=255) gctgggcaaactaagtatctgaccccgcataaggaatagaacaCAggcgg > 1:2945353‑M2/44‑50 (MQ=255) ggcaaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCa < 1:3640162‑M2/9‑1 (MQ=255) caaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTaa > 1:1136174‑M2/38‑50 (MQ=255) caaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTaa > 1:2503675‑M2/38‑50 (MQ=255) aaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAAc > 1:1073027‑M2/37‑50 (MQ=255) aaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAAc < 1:1535325‑M2/14‑1 (MQ=255) aaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAAc < 1:1868628‑M2/14‑1 (MQ=255) aaactaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAAc > 1:466833‑M2/37‑50 (MQ=255) actaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAAccc < 1:588384‑M2/16‑1 (MQ=255) actaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAAccc > 1:530485‑M2/35‑50 (MQ=255) ctaagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCg > 1:732334‑M2/34‑50 (MQ=255) taagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCg > 1:3510752‑M2/33‑49 (MQ=255) aagtatctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCGGa > 1:3271289‑M2/32‑50 (MQ=255) agtatctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCGGAc < 1:1064386‑M2/20‑1 (MQ=255) tatctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCGGACg > 1:342008‑M2/29‑49 (MQ=255) tatctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGt < 1:302132‑M2/22‑1 (MQ=255) tctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTa < 1:1201401‑M2/23‑1 (MQ=255) ctgaccccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGa > 1:1849949‑M2/26‑50 (MQ=255) tgaccccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGAc > 1:1314843‑M2/25‑50 (MQ=255) accccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGAc < 1:138018‑M2/26‑1 (MQ=255) accccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACt < 1:2034707‑M2/27‑1 (MQ=255) ccgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTAt > 1:3400253‑M2/20‑50 (MQ=255) cgcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTAt > 1:3076021‑M2/19‑49 (MQ=255) gcataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTa > 1:598214‑M2/18‑50 (MQ=255) ataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTAc > 1:3004657‑M2/16‑49 (MQ=255) ataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTAc > 1:457951‑M2/16‑49 (MQ=255) ataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTAc > 1:502817‑M2/16‑49 (MQ=255) ataaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTAc > 1:1172088‑M2/16‑49 (MQ=255) aaggaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACaa > 1:1455236‑M2/14‑49 (MQ=255) gaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGc < 1:1863262‑M2/40‑1 (MQ=255) gaatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGc > 1:771823‑M2/11‑50 (MQ=255) aatagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCg < 1:1591938‑M2/41‑1 (MQ=255) atagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCgg > 1:626689‑M2/9‑50 (MQ=255) atagaacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCgg > 1:847139‑M2/9‑50 (MQ=255) aacaCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCaaa < 1:627785‑M2/46‑1 (MQ=255) acaCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCaaa > 1:962675‑M2/4‑49 (MQ=255) caCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCaaa > 1:3608509‑M2/3‑48 (MQ=255) aCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAg < 1:3876694‑M2/49‑1 (MQ=255) cAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAGc < 1:1597869/50‑1 (MQ=255) | ACAGGGGGCCAGCCTGTTGCCGATTTTTCATCCAATGATGCTTTCACCAGGCGGCACTAACCCGGACGTAGACTGTATTACAAAAGCGGCAAAAAGC > NC_000913/2517903‑2517999 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |