| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,846,301 | Δ20,968 bp | [hycE]–[rpoS] | 21 genes [hycE], hycD, hycC, hycB, hycA, hypA, hypB, hypC, hypD, hypE, fhlA, ygbA, mutS, pphB, ygbI, ygbJ, ygbK, ygbL, ygbM, ygbN, [rpoS] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2846301 | 2867268 | 20968 | 47 [1] | [0] 46 | [hycE]–[rpoS] | [hycE],hycD,hycC,hycB,hycA,hypA,hypB,hypC,hypD,hypE,fhlA,ygbA,mutS,pphB,ygbI,ygbJ,ygbK,ygbL,ygbM,ygbN,[rpoS] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 1 (0.020) | 44 (0.910) | 31/92 | 0.1 | 99.0% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846249‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAA > NC_000913/2867269‑2867317 AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC > 1:2603300/1‑50 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCG < 1:1653800/50‑1 AACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACC < 1:1433431/49‑1 ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA < 1:1085546/50‑1 GGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATC < 1:2350585/50‑1 CGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCAT < 1:3050023/50‑1 GTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATC > 1:15201/1‑50 TAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCC < 1:1464309/50‑1 TAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCC < 1:957906/50‑1 TAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCC < 1:1306426/50‑1 TAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCC < 1:1089810/50‑1 AATGAGCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCG > 1:3320039/1‑50 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG > 1:3099044/1‑50 ATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGG > 1:1600032/1‑50 GACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCG > 1:1345326/1‑50 ACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGG > 1:3459312/1‑50 CCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC < 1:2490647/50‑1 CATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCG < 1:989149/50‑1 CATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:2545301/1‑49 TTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGC > 1:2829675/1‑47 AGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGG > 1:719878/1‑50 AGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGG < 1:2579112/50‑1 AGTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAG < 1:3571172/49‑1 GTTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC > 1:440396/1‑50 TTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC > 1:1942964/1‑49 TTTGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGC > 1:1730103/1‑49 TGCGTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGA < 1:1416878/49‑1 GTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATC > 1:1839129/1‑50 GTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATC > 1:263548/1‑50 GTTCGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATC > 1:1420311/1‑50 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC > 1:1790170/1‑49 CGTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTC < 1:3542342/49‑1 GTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCA > 1:1125386/1‑50 GTCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCA > 1:380150/1‑50 TCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCAC < 1:3462609/50‑1 TCGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCAC < 1:1727853/50‑1 CGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:1708134/1‑50 CGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:1716471/1‑50 CGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:2443174/1‑50 CGTTACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:2007411/1‑50 GTTGCCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACG > 1:565987/1‑49 ACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGT > 1:683987/1‑50 ACCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGT > 1:961469/1‑50 CCAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGT < 1:1766768/49‑1 CAAACAGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGC > 1:1585664/1‑50 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC > 1:3153809/1‑50 AGCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAC < 1:1558867/50‑1 GCACCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACG < 1:3037888/50‑1 ATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAA < 1:281740/50‑1 AAACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2846249‑2846300‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAA > NC_000913/2867269‑2867317 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |