| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,846,301 | Δ20,968 bp | [hycE]–[rpoS] | 21 genes [hycE], hycD, hycC, hycB, hycA, hypA, hypB, hypC, hypD, hypE, fhlA, ygbA, mutS, pphB, ygbI, ygbJ, ygbK, ygbL, ygbM, ygbN, [rpoS] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2846301 | 2867268 | 20968 | 47 [1] | [0] 46 | [hycE]–[rpoS] | [hycE],hycD,hycC,hycB,hycA,hypA,hypB,hypC,hypD,hypE,fhlA,ygbA,mutS,pphB,ygbI,ygbJ,ygbK,ygbL,ygbM,ygbN,[rpoS] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 1 (0.020) | 44 (0.910) | 31/92 | 0.1 | 99.0% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 0 (0.000) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAGG > NC_000913/2846251‑2846349 | aCGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGA < 1:1085546‑M1/50‑1 (MQ=255) ggCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtc < 1:2350585‑M1/50‑3 (MQ=255) cGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcat < 1:3050023‑M1/50‑5 (MQ=255) gTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatc > 1:15201‑M1/1‑45 (MQ=255) tAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatcc < 1:1089810‑M1/50‑7 (MQ=255) tAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatcc < 1:957906‑M1/50‑7 (MQ=255) tAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatcc < 1:1306426‑M1/50‑7 (MQ=255) tAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatcc < 1:1464309‑M1/50‑7 (MQ=255) aaTGAGCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccg > 1:3320039‑M1/1‑43 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccgg > 1:3099044‑M1/1‑42 (MQ=255) aTGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccgg > 1:1600032‑M1/1‑42 (MQ=255) gACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcg > 1:1345326‑M1/1‑40 (MQ=255) aCCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcgg > 1:3459312‑M1/1‑39 (MQ=255) ccATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc < 1:2490647‑M1/50‑13 (MQ=255) cATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcg < 1:989149‑M1/50‑14 (MQ=255) cATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:2545301‑M1/1‑37 (MQ=255) ttCAGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggc > 1:2829675‑M1/1‑35 (MQ=255) aGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagagg > 1:719878‑M1/1‑32 (MQ=255) aGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagagg < 1:2579112‑M1/50‑19 (MQ=255) aGTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagag < 1:3571172‑M1/49‑18 (MQ=255) gTTTGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggc > 1:440396‑M1/1‑31 (MQ=255) tttGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggc > 1:1730103‑M1/1‑30 (MQ=255) tttGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggc > 1:1942964‑M1/1‑30 (MQ=255) tGCGTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcga < 1:1416878‑M1/49‑22 (MQ=255) gTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatc > 1:263548‑M1/1‑25 (MQ=255) gTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatc > 1:1839129‑M1/1‑25 (MQ=255) gTTCGTCGTTACCAAACAGCACCGAtcatccggcggcgagaggcgacatc > 1:1420311‑M1/1‑25 (MQ=255) cgtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc > 1:1790170‑M1/1‑22 (MQ=255) cgtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctc < 1:3542342‑M1/49‑28 (MQ=255) gtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctcca > 1:1125386‑M1/1‑21 (MQ=255) gtcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctcca > 1:380150‑M1/1‑21 (MQ=255) tcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccac < 1:1727853‑M1/50‑31 (MQ=255) tcgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccac < 1:3462609‑M1/50‑31 (MQ=255) cgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:2007411‑M1/1‑19 (MQ=255) cgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:1716471‑M1/1‑19 (MQ=255) cgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:1708134‑M1/1‑19 (MQ=255) cgtTACCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:2443174‑M1/1‑19 (MQ=255) gtTGCCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacg > 1:565987‑M1/1‑18 (MQ=255) aCCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagt > 1:683987‑M1/1‑15 (MQ=255) aCCAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagt > 1:961469‑M1/1‑15 (MQ=255) ccAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagt < 1:1766768‑M1/49‑36 (MQ=255) cAAACAGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgc > 1:1585664‑M1/1‑13 (MQ=255) aGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgac > 1:3153809‑M1/1‑8 (MQ=255) aGCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgac < 1:1558867‑M1/50‑43 (MQ=255) gCACCGAtcatccggcggcgagaggcgacatctccacgcagtgcgcgacg < 1:3037888‑M1/50‑44 (MQ=255) cACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCg > 1:3585048/1‑50 (MQ=255) atcatccggcggcgagaggcgacatctccacgcagtgcgcgacgcgcaaa < 1:281740‑M1/50‑50 (MQ=255) | ACGGCGTAATGACCATTCAGTTTGCGTTCGTCGTTACCAAACAGCACCGACAGCCAGCCACCCTGTTTGTAGTAAAGAAACTCCACCACTTCCGGCAGG > NC_000913/2846251‑2846349 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |