| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 51 [0] | [0] 51 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 51 (0.990) | 43/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362114‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC > NC_000913/3367643‑3367689 GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT > 1:1678426/1‑49 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA < 1:3264555/50‑1 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 1:796400/1‑50 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTA < 1:1888705/49‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATAAATACTAAC < 1:692170/48‑1 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT < 1:972128/50‑1 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT < 1:2705522/50‑1 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG < 1:1270826/50‑1 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC > 1:809527/1‑50 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC < 1:3176262/50‑1 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC > 1:1813505/1‑50 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:3021199/1‑50 TACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:2968490/1‑49 TACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:2569470/1‑49 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGAC < 1:2287291/49‑1 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG < 1:3825724/50‑1 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:2242055/1‑50 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:3502722/1‑50 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG < 1:2674866/50‑1 ATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:1607232/1‑49 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGA < 1:1149533/50‑1 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:3759826/1‑48 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG > 1:2352192/1‑49 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA < 1:1418154/50‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA > 1:1842370/1‑50 CTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:746636/1‑50 CTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC < 1:987122/50‑1 TGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:1563630/1‑49 TGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:1617453/1‑49 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT < 1:1038439/50‑1 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:2445489/1‑50 ATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:3629045/1‑49 TTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG > 1:1053332/1‑50 TTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG > 1:530398/1‑50 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG < 1:2983084/49‑1 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG < 1:1778488/49‑1 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:3267886/1‑49 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG < 1:3064107/49‑1 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA < 1:19818/50‑1 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGC < 1:2223887/49‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 1:408935/50‑1 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT > 1:3449887/1‑50 ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:3732348/1‑50 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTT < 1:2091585/50‑1 CAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:719204/1‑50 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTAT < 1:520336/50‑1 GAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:568627/1‑49 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA < 1:3564087/50‑1 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACG < 1:790935/49‑1 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT > 1:3960502/1‑50 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:3499530/50‑1 GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362114‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC > NC_000913/3367643‑3367689 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |