| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 51 [0] | [0] 51 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 51 (0.990) | 43/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACCTTAGCCACAGGGATGGTTCCTGAAACATCAGTATTGCTGGTTGATG > NC_000913/3362114‑3362208 | gCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACt > 1:1678426‑M1/1‑48 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa < 1:3264555‑M1/50‑4 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaa > 1:796400‑M1/1‑47 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACta < 1:1888705‑M1/49‑3 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATAAATACtaac < 1:692170‑M1/48‑5 (MQ=255) gACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaat < 1:972128‑M1/50‑8 (MQ=255) gACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaat < 1:2705522‑M1/50‑8 (MQ=255) acacATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatg < 1:1270826‑M1/50‑9 (MQ=255) acattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgcc > 1:809527‑M1/1‑40 (MQ=255) acattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgcc < 1:3176262‑M1/50‑11 (MQ=255) acattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgcc > 1:1813505‑M1/1‑40 (MQ=255) ttacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 1:3021199‑M1/1‑37 (MQ=255) tacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 1:2968490‑M1/1‑36 (MQ=255) tacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 1:2569470‑M1/1‑36 (MQ=255) acattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggac < 1:2287291‑M1/49‑15 (MQ=255) cattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag < 1:3825724‑M1/50‑17 (MQ=255) cattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 1:2242055‑M1/1‑34 (MQ=255) cattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 1:3502722‑M1/1‑34 (MQ=255) cattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag < 1:2674866‑M1/50‑17 (MQ=255) attCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 1:1607232‑M1/1‑33 (MQ=255) ttCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacagga < 1:1149533‑M1/50‑19 (MQ=255) ttCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 1:3759826‑M1/1‑32 (MQ=255) cACTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggag > 1:2352192‑M1/1‑30 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagta < 1:1418154‑M1/50‑22 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagta > 1:1842370‑M1/1‑29 (MQ=255) cTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtac > 1:746636‑M1/1‑28 (MQ=255) cTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtac < 1:987122‑M1/50‑23 (MQ=255) tGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtac > 1:1563630‑M1/1‑27 (MQ=255) tGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtac > 1:1617453‑M1/1‑27 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat < 1:1038439‑M1/50‑26 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat > 1:2445489‑M1/1‑25 (MQ=255) aTTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat > 1:3629045‑M1/1‑24 (MQ=255) ttATAACAACATCAATGAATACtaacaatgccggacaggagtactatcag > 1:1053332‑M1/1‑22 (MQ=255) ttATAACAACATCAATGAATACtaacaatgccggacaggagtactatcag > 1:530398‑M1/1‑22 (MQ=255) tataACAACATCAATGAATACtaacaatgccggacaggagtactatcag < 1:2983084‑M1/49‑29 (MQ=255) ataACAACATCAATGAATACtaacaatgccggacaggagtactatcagg < 1:1778488‑M1/49‑30 (MQ=255) ataACAACATCAATGAATACtaacaatgccggacaggagtactatcagg > 1:3267886‑M1/1‑20 (MQ=255) ataACAACATCAATGAATACtaacaatgccggacaggagtactatcagg < 1:3064107‑M1/49‑30 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggca < 1:19818‑M1/50‑32 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggc < 1:2223887‑M1/49‑31 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcatt < 1:408935‑M1/50‑34 (MQ=255) acaTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgt > 1:3449887‑M1/1‑14 (MQ=255) aTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgttt > 1:3732348‑M1/1‑12 (MQ=255) tCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtttt < 1:2091585‑M1/50‑40 (MQ=255) cAATGAATACtaacaatgccggacaggagtactatcaggcattcgtttta > 1:719204‑M1/1‑10 (MQ=255) aaTGAATACtaacaatgccggacaggagtactatcaggcattcgttttat < 1:520336‑M1/50‑42 (MQ=255) gAATACtaacaatgccggacaggagtactatcaggcattcgttttatac > 1:568627‑M1/1‑6 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacga < 1:3564087‑M1/50‑46 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacg < 1:790935‑M1/49‑45 (MQ=255) aTACtaacaatgccggacaggagtactatcaggcattcgttttatacgat > 1:3960502‑M1/1‑4 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc < 1:3499530‑M1/50‑48 (MQ=255) | GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACCTTAGCCACAGGGATGGTTCCTGAAACATCAGTATTGCTGGTTGATG > NC_000913/3362114‑3362208 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |