| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 332,366 | Δ44,951 bp | pdeL–yaiL | 39 genes pdeL, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, mhpD, mhpF, mhpE, mhpT, yaiL |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 332366 | 377316 | 44951 | 71 [0] | [0] 71 | pdeL–yaiL | pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 332365 | 0 (0.000) | 69 (1.340) | 47/98 | 0.0 | 100% | intergenic (+489/‑6) | yahV/pdeL | protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| ? | NC_000913 | 377317 = | NA (NA) | intergenic (+6/+218) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
GAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCGGTA > NC_000913/332317‑332413 | gAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGgtg > 1:2984161/1‑49 (MQ=255)gAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGgtg > 1:1322268/1‑49 (MQ=255) aTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgat < 1:3525527‑M1/50‑4 (MQ=255) aTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgat < 1:2746117‑M1/50‑4 (MQ=255) cGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgat > 1:3776969‑M1/1‑45 (MQ=255) gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataag > 1:909442‑M1/1‑44 (MQ=255) gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataag > 1:1212677‑M1/1‑44 (MQ=255) aCAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagt < 1:858370‑M1/50‑8 (MQ=255) cAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtc > 1:2925284‑M1/1‑42 (MQ=255) cAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtc < 1:3035365‑M1/50‑9 (MQ=255) aGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcg > 1:2894230‑M1/1‑41 (MQ=255) ggTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgt < 1:3648554‑M1/50‑11 (MQ=255) gTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtg > 1:1422682‑M1/1‑39 (MQ=255) gTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtg < 1:3322948‑M1/50‑12 (MQ=255) tAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgc < 1:3461257‑M1/50‑13 (MQ=255) aaTCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg > 1:1794227‑M1/1‑37 (MQ=255) aTCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgc < 1:2364793‑M1/50‑15 (MQ=255) tCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg > 1:3121365‑M1/1‑35 (MQ=255) aCTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcaga < 1:1286212‑M1/50‑18 (MQ=255) aCTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcaga < 1:2845162‑M1/50‑18 (MQ=255) aCTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg > 1:3664573‑M1/1‑33 (MQ=255) cATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgc > 1:2160947‑M1/1‑30 (MQ=255) cATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgc > 1:2428784‑M1/1‑30 (MQ=255) aTACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgc < 1:1991800‑M1/49‑21 (MQ=255) tACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcct > 1:1964184‑M1/1‑28 (MQ=255) tACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcct > 1:3845204‑M1/1‑28 (MQ=255) cTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctga < 1:2480348‑M1/50‑25 (MQ=255) cTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctga > 1:2514143‑M1/1‑26 (MQ=255) tGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat > 1:2418024‑M1/1‑25 (MQ=255) tGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat > 1:1655903‑M1/1‑25 (MQ=255) tGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat > 1:3889151‑M1/1‑25 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgc < 1:1662476‑M1/50‑28 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgc < 1:1385788‑M1/50‑28 (MQ=255) cAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcga > 1:1114916‑M1/1‑21 (MQ=255) cAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcga > 1:370855‑M1/1‑21 (MQ=255) cAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcga > 1:2428900‑M1/1‑21 (MQ=255) aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac > 1:2261609‑M1/1‑20 (MQ=255) cGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc > 1:3398823‑M1/1‑18 (MQ=255) cGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc > 1:810171‑M1/1‑18 (MQ=255) cGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc > 1:3270205‑M1/1‑18 (MQ=255) cGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc > 1:2433824‑M1/1‑18 (MQ=255) gATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgct < 1:2535541‑M1/50‑34 (MQ=255) gATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgct < 1:2948921‑M1/50‑34 (MQ=255) gATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc > 1:1821701‑M1/1‑17 (MQ=255) aTAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgcta > 1:1908360‑M1/1‑16 (MQ=255) tAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctat > 1:3475541‑M1/1‑15 (MQ=255) tAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctat < 1:2393572‑M1/50‑36 (MQ=255) aaaaTATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatg > 1:3727382‑M1/1‑14 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc < 1:1376244‑M1/50‑38 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc < 1:2707055‑M1/50‑38 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatg < 1:1431334‑M1/49‑37 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatg < 1:2677160‑M1/49‑37 (MQ=255) aaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcg > 1:2173657‑M1/1‑12 (MQ=255) aaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcg > 1:2887389‑M1/1‑12 (MQ=255) aGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgc > 1:1224933‑M1/1‑11 (MQ=255) aGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgc < 1:3744345‑M1/50‑40 (MQ=255) gATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcg > 1:2753641‑M1/1‑10 (MQ=255) gATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcg < 1:2563896‑M1/50‑41 (MQ=255) aTAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgt < 1:761445‑M1/50‑42 (MQ=255) aTAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgt < 1:471242‑M1/50‑42 (MQ=255) aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctt < 1:854140‑M1/50‑45 (MQ=255) aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct > 1:871300‑M1/1‑6 (MQ=255) aGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctta < 1:1057543‑M1/50‑46 (MQ=255) aGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctta > 1:2326701‑M1/1‑5 (MQ=255) gTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatc < 1:2935136‑M1/50‑48 (MQ=255) tGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatca < 1:1258535‑M1/50‑49 (MQ=255) tGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatca < 1:2894043‑M1/50‑49 (MQ=255) tGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatca < 1:825805‑M1/50‑49 (MQ=255) tGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat > 1:1810529‑M1/1‑2 (MQ=255) tGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat > 1:188179‑M1/1‑2 (MQ=255) tGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat > 1:3432763‑M1/1‑2 (MQ=255) | GAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCGGTA > NC_000913/332317‑332413 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |