| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 332,366 | Δ44,951 bp | pdeL–yaiL | 39 genes pdeL, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, mhpD, mhpF, mhpE, mhpT, yaiL |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 332366 | 377316 | 44951 | 71 [0] | [0] 71 | pdeL–yaiL | pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 332365 | 0 (0.000) | 69 (1.340) | 47/98 | 0.0 | 100% | intergenic (+489/‑6) | yahV/pdeL | protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| ? | NC_000913 | 377317 = | NA (NA) | intergenic (+6/+218) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
CCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGG > NC_000913/377270‑377366 | atcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt < 1:3525527‑M2/3‑1 (MQ=255)atcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt < 1:2746117‑M2/3‑1 (MQ=255) cgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt > 1:3776969‑M2/46‑48 (MQ=255) gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAg > 1:909442‑M2/45‑50 (MQ=255) gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAg > 1:1212677‑M2/45‑50 (MQ=255) acaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGt < 1:858370‑M2/7‑1 (MQ=255) caggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTc < 1:3035365‑M2/8‑1 (MQ=255) caggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTc > 1:2925284‑M2/43‑50 (MQ=255) aggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCg > 1:2894230‑M2/42‑50 (MQ=255) ggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGt < 1:3648554‑M2/10‑1 (MQ=255) gtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTg > 1:1422682‑M2/40‑50 (MQ=255) gtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTg < 1:3322948‑M2/11‑1 (MQ=255) taatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgc < 1:3461257‑M2/12‑1 (MQ=255) aatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg > 1:1794227‑M2/38‑50 (MQ=255) atcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcgc < 1:2364793‑M2/14‑1 (MQ=255) tcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg > 1:3121365‑M2/36‑48 (MQ=255) actcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg > 1:3664573‑M2/34‑46 (MQ=255) actcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGa < 1:1286212‑M2/17‑1 (MQ=255) actcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGa < 1:2845162‑M2/17‑1 (MQ=255) catactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGc > 1:2428784‑M2/31‑50 (MQ=255) catactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGc > 1:2160947‑M2/31‑50 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGc < 1:1991800‑M2/20‑1 (MQ=255) tactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt > 1:3845204‑M2/29‑50 (MQ=255) tactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt > 1:1964184‑M2/29‑50 (MQ=255) ctgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGa < 1:2480348‑M2/24‑1 (MQ=255) ctgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGa > 1:2514143‑M2/27‑50 (MQ=255) tgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt > 1:2418024‑M2/26‑50 (MQ=255) tgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt > 1:3889151‑M2/26‑50 (MQ=255) tgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt > 1:1655903‑M2/26‑50 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc < 1:1662476‑M2/27‑1 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc < 1:1385788‑M2/27‑1 (MQ=255) cagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGa > 1:1114916‑M2/22‑50 (MQ=255) cagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGa > 1:2428900‑M2/22‑50 (MQ=255) cagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGa > 1:370855‑M2/22‑50 (MQ=255) agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc > 1:2261609‑M2/21‑50 (MQ=255) cgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc > 1:3270205‑M2/19‑50 (MQ=255) cgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc > 1:810171‑M2/19‑50 (MQ=255) cgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc > 1:3398823‑M2/19‑50 (MQ=255) cgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc > 1:2433824‑M2/19‑50 (MQ=255) gataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc > 1:1821701‑M2/18‑49 (MQ=255) gataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCt < 1:2535541‑M2/33‑1 (MQ=255) gataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCt < 1:2948921‑M2/33‑1 (MQ=255) ataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTa > 1:1908360‑M2/17‑50 (MQ=255) taaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt < 1:2393572‑M2/35‑1 (MQ=255) taaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt > 1:3475541‑M2/16‑50 (MQ=255) aaaatataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATg > 1:3727382‑M2/15‑50 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgc < 1:1376244‑M2/37‑1 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgc < 1:2707055‑M2/37‑1 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATg < 1:2677160‑M2/36‑1 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATg < 1:1431334‑M2/36‑1 (MQ=255) aagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcg > 1:2173657‑M2/13‑50 (MQ=255) aagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcg > 1:2887389‑M2/13‑50 (MQ=255) agataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcgc > 1:1224933‑M2/12‑50 (MQ=255) agataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcgc < 1:3744345‑M2/39‑1 (MQ=255) gataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGcgcg > 1:2753641‑M2/11‑50 (MQ=255) gataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGcgcg < 1:2563896‑M2/40‑1 (MQ=255) ataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGt < 1:471242‑M2/41‑1 (MQ=255) ataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGt < 1:761445‑M2/41‑1 (MQ=255) aaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCtt < 1:854140‑M2/44‑1 (MQ=255) aaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCt > 1:871300‑M2/7‑49 (MQ=255) aggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTa < 1:1057543‑M2/45‑1 (MQ=255) aggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTa > 1:2326701‑M2/6‑50 (MQ=255) gtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATc < 1:2935136‑M2/47‑1 (MQ=255) tgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAt > 1:3432763‑M2/3‑48 (MQ=255) tgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAt > 1:1810529‑M2/3‑48 (MQ=255) tgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAt > 1:188179‑M2/3‑48 (MQ=255) tgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCa < 1:825805‑M2/48‑1 (MQ=255) tgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCa < 1:1258535‑M2/48‑1 (MQ=255) tgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCa < 1:2894043‑M2/48‑1 (MQ=255) gATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAgg < 1:375360/50‑1 (MQ=255) gATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAg < 1:810323/49‑1 (MQ=255) | CCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGG > NC_000913/377270‑377366 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |