New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 380111 | 0 (0.000) | 26 (0.660) +CGAGATGGACG |
23/76 | 0.2 | 56.0% | coding (732/774 nt) | yaiO | outer membrane protein YaiO |
? | NC_000913 | 624576 = | 53 (1.030) | intergenic (‑66/‑309) | fepB/entC | ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC |
GAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTCAGCC > NC_000913/380062‑380157 | gAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTa > 1:536583/1‑50 (MQ=255) aaGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc < 1:1697865‑M1/50‑2 (MQ=255) aaGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc > 1:1814996‑M1/1‑49 (MQ=255) gAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc > 1:3842687‑M1/1‑46 (MQ=255) tCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatg < 1:3063672‑M1/50‑8 (MQ=255) aTTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacgg < 1:838008‑M1/50‑13 (MQ=255) aTTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacgg < 1:216859‑M1/50‑13 (MQ=255) ccAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcc < 1:2073064‑M1/49‑16 (MQ=255) cAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccc < 1:2885137‑M1/50‑18 (MQ=255) aGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccct > 1:925608‑M1/1‑32 (MQ=255) aGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccct > 1:222645‑M1/1‑32 (MQ=255) ggTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctc < 1:1355543‑M1/50‑20 (MQ=255) gTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcg < 1:1939435‑M1/50‑21 (MQ=255) aGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccc > 1:2130769‑M1/1‑27 (MQ=255) gACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccc > 1:3023207‑M1/1‑26 (MQ=255) cGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccct > 1:1788088‑M1/1‑24 (MQ=255) cTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg > 1:3177555‑M1/1‑20 (MQ=255) cAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgggga < 1:3230867‑M1/49‑33 (MQ=255) cAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgggg < 1:1725616‑M1/48‑32 (MQ=255) cAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg > 1:3630949‑M1/1‑17 (MQ=255) aaGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgggga > 1:74448‑M1/1‑16 (MQ=255) aGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagag > 1:910787‑M1/1‑15 (MQ=255) ttGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagaggg < 1:3130230‑M1/50‑38 (MQ=255) gCAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggt > 1:641820‑M1/1‑11 (MQ=255) cAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggtta < 1:3251438‑M1/50‑41 (MQ=255) aGACCGTTAcgagatggacggtcccctcgcccccttggggagagggttag > 1:3150214‑M1/1‑9 (MQ=255) aCCGTTAcgagatggacggtcccctcgcccccttggggagagggttaggg > 1:1157006‑M1/1‑7 (MQ=255) ccGTTAcgagatggacggtcccctcgcccccttggggagagggttagggt < 1:1929626‑M1/50‑45 (MQ=255) cGTTAcgagatggacggtcccctcgcccccttggggagagggttagggtg < 1:1831861‑M1/50‑46 (MQ=255) cGTTAcgagatggacggtcccctcgcccccttggggagagggttagggt > 1:1689742‑M1/1‑5 (MQ=255) gTTAcgagatggacggtcccctcgcccccttggggagagggttagggtga < 1:896410‑M1/50‑47 (MQ=255) | GAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTCAGCC > NC_000913/380062‑380157 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |