| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,165,151 | Δ12,060 bp | yegP–gatY | 17 genes yegP, yegQ, cyaR, ogrK, yegZ, yegR, yegS, gatR, insE‑5, insF‑5, gatR, gatD, gatC, gatB, gatA, gatZ, gatY |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2165151 | 2177210 | 12060 | 52 [0] | [0] 52 | yegP–gatY | yegP,yegQ,cyaR,ogrK,yegZ,yegR,yegS,gatR,insE‑5,insF‑5,gatR,gatD,gatC,gatB,gatA,gatZ,gatY |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2165150 | 0 (0.000) | 52 (1.010) | 42/98 | 0.0 | 100% | intergenic (+152/‑39) | baeR/yegP | DNA‑binding transcriptional activator BaeR/DUF1508 domain‑containing protein YegP |
| ? | NC_000913 | 2177211 = | 0 (0.000) | intergenic (‑7/+301) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I | |||||
GGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGATACACAATTTCAATCAAGGAGTCATTATGGCTGGTTG > NC_000913/2165103‑2165199 | ggCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAat < 1:2366535‑M1/50‑3 (MQ=255) cAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgt > 1:664793‑M1/1‑43 (MQ=255) aGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtc > 1:1457136‑M1/1‑42 (MQ=255) aaaTCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtt > 1:2676475‑M1/1‑39 (MQ=255) aTCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttg < 1:2697899‑M1/50‑14 (MQ=255) tCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgt < 1:883674‑M1/50‑15 (MQ=255) tCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgt > 1:2222338‑M1/1‑36 (MQ=255) tCGCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgt < 1:680348‑M1/50‑15 (MQ=255) gCTCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttt < 1:1655703‑M1/50‑17 (MQ=255) tCATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttc > 1:3285761‑M1/1‑32 (MQ=255) cATACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttc > 1:1519242‑M1/1‑31 (MQ=255) aTACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcga > 1:2183003‑M1/1‑30 (MQ=255) aTACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcg < 1:1641416‑M1/49‑20 (MQ=255) aTACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttc < 1:1822213‑M1/48‑19 (MQ=255) tACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgat < 1:832782‑M1/50‑22 (MQ=255) tACTTTAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgat < 1:270043‑M1/50‑22 (MQ=255) ttAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttc > 1:2938364‑M1/1‑25 (MQ=255) tAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttca < 1:168958‑M1/49‑26 (MQ=255) tAATCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttca > 1:2597160‑M1/1‑24 (MQ=255) tAAACGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttc < 1:3745869‑M1/48‑25 (MQ=255) aaTCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaa > 1:2178684‑M1/1‑23 (MQ=255) aaTCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaa > 1:725098‑M1/1‑23 (MQ=255) aTCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaa > 1:2859425‑M1/1‑22 (MQ=255) aTCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaa < 1:3462513‑M1/50‑29 (MQ=255) tCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaat < 1:1119060‑M1/50‑30 (MQ=255) tCGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaa > 1:945769‑M1/1‑21 (MQ=255) cGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaata > 1:694248‑M1/1‑20 (MQ=255) cGGTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaata > 1:3219436‑M1/1‑20 (MQ=255) ggTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatat < 1:1472527‑M1/50‑32 (MQ=255) ggTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatat < 1:3389478‑M1/50‑32 (MQ=255) ggTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaata > 1:1954039‑M1/1‑19 (MQ=255) ggTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaata < 1:1165690‑M1/49‑31 (MQ=255) ggTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaata < 1:2740342‑M1/49‑31 (MQ=255) gTAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatat > 1:1506332‑M1/1‑18 (MQ=255) tAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataa < 1:1872082‑M1/50‑34 (MQ=255) tAAACAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataa < 1:1889501‑M1/50‑34 (MQ=255) aaCAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatg < 1:2842233‑M1/50‑36 (MQ=255) aaCAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataat < 1:2035648‑M1/49‑35 (MQ=255) aaCAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataat < 1:3956868‑M1/49‑35 (MQ=255) cAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaa < 1:831316‑M1/50‑38 (MQ=255) cAGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatga > 1:2920656‑M1/1‑13 (MQ=255) aGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaaa > 1:2557562‑M1/1‑12 (MQ=255) aGCACCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaaa < 1:1998527‑M1/50‑39 (MQ=255) aCCTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaaatta < 1:3031557‑M1/50‑42 (MQ=255) ccTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaaattat < 1:2028266‑M1/50‑43 (MQ=255) ccTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaaattat < 1:2325471‑M1/50‑43 (MQ=255) cTTTAGAatcctgtcgtttgttttcgatttcaaaatataatgaaattatt < 1:3685913‑M1/50‑44 (MQ=255) tttAGAatcctgtcgtttgttttcgatttcaaaatataatgaaattattt > 1:1714415‑M1/1‑6 (MQ=255) tttAGAatcctgtcgtttgttttcgatttcaaaatataatgaaattattt > 1:2329368‑M1/1‑6 (MQ=255) aGAatcctgtcgtttgttttcgatttcaaaatataatgaaattatttgtt > 1:652085‑M1/1‑3 (MQ=255) gAatcctgtcgtttgttttcgatttcaaaatataatgaaattatttgttt < 1:2190053‑M1/50‑49 (MQ=255) aatcctgtcgtttgttttcgatttcaaaatataatgaaattatttgtttt < 1:1946093‑M1/50‑50 (MQ=255) | GGCATCAGAAAATCGCTCATACTTTAATCGGTAAACAGCACCTTTAGATGCTGTTTTCGATACACAATTTCAATCAAGGAGTCATTATGGCTGGTTG > NC_000913/2165103‑2165199 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |