| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,627,518 | Δ25,244 bp | [ydfG]–[ynfP] | 48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1627518 | 1652761 | 25244 | 53 [0] | [0] 52 | [ydfG]–[ynfP] | [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1627517 | 0 (0.000) | 52 (1.040) | 41/96 | 0.0 | 100% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 0 (0.000) | coding (77/111 nt) | ynfP | protein YnfP | |||||
ATATTTATCAAATAGTTAACACGCATGACTCTTGAAATCCATAAATTCAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTA > NC_000913/1652713‑1652809 | catcccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaa < 1:3962383‑M2/1‑1 (MQ=255) atcccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAg > 1:3768291‑M2/49‑50 (MQ=255) tcccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgc < 1:2266378‑M2/3‑1 (MQ=255) tcccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgc < 1:3793004‑M2/3‑1 (MQ=255) cccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg > 1:898948‑M2/47‑50 (MQ=255) ccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg < 1:2316135‑M2/4‑1 (MQ=255) ccgtgctatgttattgacacacaaaagcgttgaggaacagtgagaAgcg < 1:2165046‑M2/4‑1 (MQ=255) gtgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAg < 1:1769383‑M2/7‑1 (MQ=255) gtgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAg < 1:1793591‑M2/7‑1 (MQ=255) gtgctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAg > 1:2024196‑M2/44‑50 (MQ=255) ctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTg < 1:153807‑M2/9‑1 (MQ=255) ctatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGc > 1:318940‑M2/41‑50 (MQ=255) tatgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGcc > 1:43616‑M2/40‑50 (MQ=255) atgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGcc > 1:840640‑M2/39‑49 (MQ=255) tgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGccc < 1:1193277‑M2/12‑1 (MQ=255) tgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGccc < 1:2399742‑M2/12‑1 (MQ=255) tgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGcc > 1:1781950‑M2/38‑48 (MQ=255) tgttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCa < 1:815718‑M2/13‑1 (MQ=255) ttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAg < 1:792795‑M2/14‑1 (MQ=255) ttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAg < 1:2860943‑M2/14‑1 (MQ=255) ttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAg < 1:753666‑M2/14‑1 (MQ=255) ttattgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGc > 1:1750534‑M2/36‑50 (MQ=255) attgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGcc < 1:1383839‑M2/16‑1 (MQ=255) ttgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCa < 1:2800379‑M2/17‑1 (MQ=255) tgacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATc > 1:2037652‑M2/32‑50 (MQ=255) gacacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATc < 1:2925244‑M2/19‑1 (MQ=255) acacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATccc < 1:2392999‑M2/21‑1 (MQ=255) acacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATccc > 1:2558693‑M2/30‑50 (MQ=255) acacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATccc > 1:2185679‑M2/30‑50 (MQ=255) cacacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATccc > 1:3567246‑M2/29‑49 (MQ=255) acacaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGa < 1:2494238‑M2/23‑1 (MQ=255) acaaaagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATa > 1:3297313‑M2/26‑50 (MQ=255) aagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgc > 1:1467013‑M2/22‑50 (MQ=255) aagcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgc > 1:1294871‑M2/22‑50 (MQ=255) agcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgct < 1:925206‑M2/30‑1 (MQ=255) gcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgctg < 1:2802979‑M2/31‑1 (MQ=255) gcgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATActgctg < 1:3726933‑M2/31‑1 (MQ=255) cgttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACtgctgc > 1:2993421‑M2/19‑50 (MQ=255) gttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTgctgct > 1:1010922‑M2/18‑50 (MQ=255) gttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTgctgct < 1:276224‑M2/33‑1 (MQ=255) gttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTgctgct > 1:1555730‑M2/18‑50 (MQ=255) ttgaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCtt > 1:3681185‑M2/17‑50 (MQ=255) gaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCttt < 1:3954246‑M2/35‑1 (MQ=255) gaggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCttt > 1:2894146‑M2/15‑49 (MQ=255) aggaacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCa > 1:1874598‑M2/14‑50 (MQ=255) aacagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCa < 1:2937593‑M2/40‑1 (MQ=255) cagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCaaa > 1:828909‑M2/9‑50 (MQ=255) cagtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCaaa > 1:2598205‑M2/9‑50 (MQ=255) agtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAt > 1:3131660‑M2/8‑50 (MQ=255) gtgagaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATc < 1:935363‑M2/44‑1 (MQ=255) agaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCtt < 1:2662626‑M2/47‑1 (MQ=255) gaAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTa < 1:393018‑M2/48‑1 (MQ=255) | ATATTTATCAAATAGTTAACACGCATGACTCTTGAAATCCATAAATTCAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTA > NC_000913/1652713‑1652809 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |