| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,627,518 | Δ25,244 bp | [ydfG]–[ynfP] | 48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1627518 | 1652761 | 25244 | 53 [0] | [0] 52 | [ydfG]–[ynfP] | [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1627517 | 0 (0.000) | 52 (1.040) | 41/96 | 0.0 | 100% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 0 (0.000) | coding (77/111 nt) | ynfP | protein YnfP | |||||
GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGATGATCGTTTTAGTAACTGGAGCAACGGCAGGTTTTGGTGAATGCATTA > NC_000913/1627468‑1627565 | gCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA < 1:3169650‑M1/50‑1 (MQ=255) cATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAa < 1:3962383‑M1/50‑2 (MQ=255) aTCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAag > 1:3768291‑M1/1‑48 (MQ=255) tCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagc < 1:3793004‑M1/50‑4 (MQ=255) tCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagc < 1:2266378‑M1/50‑4 (MQ=255) cccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 1:898948‑M1/1‑46 (MQ=255) ccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg < 1:2316135‑M1/49‑5 (MQ=255) ccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg < 1:2165046‑M1/49‑5 (MQ=255) gTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcag < 1:1769383‑M1/50‑8 (MQ=255) gTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcag > 1:2024196‑M1/1‑43 (MQ=255) gTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcag < 1:1793591‑M1/50‑8 (MQ=255) cTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgc > 1:318940‑M1/1‑40 (MQ=255) cTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtg < 1:153807‑M1/49‑10 (MQ=255) tATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:43616‑M1/1‑39 (MQ=255) aTGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:840640‑M1/1‑38 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgccca < 1:815718‑M1/50‑14 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgccc < 1:2399742‑M1/49‑13 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgccc < 1:1193277‑M1/49‑13 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:1781950‑M1/1‑37 (MQ=255) ttATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagc > 1:1750534‑M1/1‑35 (MQ=255) ttATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccag < 1:792795‑M1/49‑15 (MQ=255) ttATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccag < 1:753666‑M1/49‑15 (MQ=255) ttATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccag < 1:2860943‑M1/49‑15 (MQ=255) aTTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcc < 1:1383839‑M1/49‑17 (MQ=255) ttGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcca < 1:2800379‑M1/49‑18 (MQ=255) tGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatc > 1:2037652‑M1/1‑31 (MQ=255) gACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatc < 1:2925244‑M1/49‑20 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc > 1:2185679‑M1/1‑29 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc > 1:2558693‑M1/1‑29 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc < 1:2392999‑M1/50‑22 (MQ=255) cacacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc > 1:3567246‑M1/1‑28 (MQ=255) acacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccga < 1:2494238‑M1/50‑24 (MQ=255) acaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgata > 1:3297313‑M1/1‑25 (MQ=255) aaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgc > 1:1467013‑M1/1‑21 (MQ=255) aaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgc > 1:1294871‑M1/1‑21 (MQ=255) aGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgct < 1:925206‑M1/50‑31 (MQ=255) gCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctg < 1:2802979‑M1/50‑32 (MQ=255) gCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctg < 1:3726933‑M1/50‑32 (MQ=255) cGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgc > 1:2993421‑M1/1‑18 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct > 1:1010922‑M1/1‑17 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct < 1:276224‑M1/50‑34 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct > 1:1555730‑M1/1‑17 (MQ=255) ttGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctt > 1:3681185‑M1/1‑16 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt < 1:3954246‑M1/49‑36 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:2894146‑M1/1‑14 (MQ=255) aGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttca > 1:1874598‑M1/1‑13 (MQ=255) aaCAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacca < 1:2937593‑M1/50‑41 (MQ=255) cAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaa > 1:828909‑M1/1‑8 (MQ=255) cAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaa > 1:2598205‑M1/1‑8 (MQ=255) aGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaat > 1:3131660‑M1/1‑7 (MQ=255) gTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatc < 1:935363‑M1/50‑45 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcctt < 1:2662626‑M1/50‑48 (MQ=255) gaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcctta < 1:393018‑M1/50‑49 (MQ=255) | GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGATGATCGTTTTAGTAACTGGAGCAACGGCAGGTTTTGGTGAATGCATTA > NC_000913/1627468‑1627565 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |