| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 50 [0] | [0] 50 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 45 (0.900) | 34/96 | 0.1 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAA > NC_000913/2320094‑2320192 | cTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT > 1:3415464‑M1/1‑50 (MQ=255) gATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt > 1:2187750‑M1/1‑48 (MQ=255) gATGGCAATCCTGATGGTCATCGTCCCAACGCTTACTATTGGTTATATtt > 1:828103‑M1/1‑48 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATt < 1:3752490‑M1/48‑2 (MQ=255) tGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttca > 1:611364‑M1/1‑46 (MQ=255) tGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttca > 1:3489815‑M1/1‑46 (MQ=255) gCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcac < 1:1028858‑M1/49‑6 (MQ=255) gCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcac < 1:1977404‑M1/49‑6 (MQ=255) aaTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccac > 1:1474662‑M1/1‑42 (MQ=255) aaTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccac > 1:2912697‑M1/1‑42 (MQ=255) aTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccact < 1:412991‑M1/50‑10 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcat > 1:2197278‑M1/1‑38 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcat > 1:2141730‑M1/1‑38 (MQ=255) tGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcatt > 1:2534743‑M1/1‑37 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgc > 1:1813642‑M1/1‑35 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcatt < 1:1319771‑M1/48‑14 (MQ=255) tCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccaca > 1:1586470‑M1/1‑31 (MQ=255) ttGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattc < 1:1200983‑M1/50‑23 (MQ=255) gTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcct > 1:2639375‑M1/1‑26 (MQ=255) gTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcc < 1:363672‑M1/49‑24 (MQ=255) tCCCAACGCTTACCATTGGTTATATttcaccactcattgccacattcct < 1:2117678‑M1/49‑25 (MQ=255) ccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttgt < 1:2747992‑M1/50‑28 (MQ=255) cAACGCTTACTATTGGTTATATttcaccactcattgccacattccttgtg > 1:1207553‑M1/1‑22 (MQ=255) cAACGCTTACTATTGGTTATATttcaccactcattgccacattccttgtg > 1:2066928‑M1/1‑22 (MQ=255) aCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta < 1:1570638‑M1/50‑31 (MQ=255) aCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta > 1:1717121‑M1/1‑20 (MQ=255) gCTTACTATTGGTTATATttcaccactcattgccacattccttgtgtata < 1:2679823‑M1/50‑33 (MQ=255) gCTTACTATTGGTTATATttcaccactcattgccacattccttgtgtata < 1:3439132‑M1/50‑33 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag > 1:1270014‑M1/1‑17 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag < 1:296405‑M1/50‑34 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag < 1:1774590‑M1/50‑34 (MQ=255) ttACTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 1:3003751‑M1/1‑16 (MQ=255) aCTATTGGTTATATttcaccactcattgccacattccttgtgtatagc < 1:2861732‑M1/48‑35 (MQ=255) tATTGGTTATATttcaccactcattgccacattccttgtgtatagccagc > 1:3541224‑M1/1‑12 (MQ=255) ttGGTTATATttcaccactcattgccacattccttgtgtatagccagcca < 1:2162467‑M1/50‑41 (MQ=255) ttGGTTATATttcaccactcattgccacattccttgtgtatagccagcca < 1:2326735‑M1/50‑41 (MQ=255) ttGGTTATATttcaccactcattgccacattccttgtgtatagccagcc < 1:3927243‑M1/49‑40 (MQ=255) ttGGTTATATttcaccactcattgccacattccttgtgtatagccagc < 1:778488‑M1/48‑39 (MQ=255) ggTTATATttcaccactcattgccacattccttgtgtatagccagccatt > 1:760967‑M1/1‑8 (MQ=255) gTTATATttcaccactcattgccacattccttgtgtatagccagccattt > 1:3181257‑M1/1‑7 (MQ=255) gTTATATttcaccactcattgccacattccttgtgtatagccagccattt > 1:3618934‑M1/1‑7 (MQ=255) tataTttcaccactcattgccacattccttgtgtatagccagccattttt > 1:1856184‑M1/1‑5 (MQ=255) atatttcaccactcattgccacattccttgtgtatagccagccattttt < 1:1085855‑M1/49‑46 (MQ=255) tatttcaccactcattgccacattccttgtgtatagccagccatttttta > 1:614713‑M1/1‑3 (MQ=255) atttcaccactcattgccacattccttgtgtatagccagccattttttac > 1:2988457‑M1/1‑2 (MQ=255) atttcaccactcattgccacattccttgtgtatagccagccattttttac > 1:1269824‑M1/1‑2 (MQ=255) tttcaccactcattgccacattccttgtgtatagccagccattttttacg < 1:729787‑M1/50‑50 (MQ=255) tttcaccactcattgccacattccttgtgtatagccagccattttttac < 1:343571‑M1/49‑49 (MQ=255) tttcaccactcattgccacattccttgtgtatagccagccattttttac < 1:3934612‑M1/49‑49 (MQ=255) tttcaccactcattgccacattccttgtgtatagccagccattttttac < 1:651205‑M1/49‑49 (MQ=255) | CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAA > NC_000913/2320094‑2320192 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |