| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 50 [0] | [0] 50 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 45 (0.900) | 34/96 | 0.1 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
TGCGCCAAAACCTACAAGACCATAGAACCGCCAGCCTTTCGCCTTTTTTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACGG > NC_000913/2336585‑2336682 | gatggcaatcctgatggtcattgtcccaacgcttactattggttatattt > 1:2187750‑M2/49‑50 (MQ=255)gatggcaatcctgatggtcatcgtcccaacgcttactattggttatattt > 1:828103‑M2/49‑50 (MQ=255) atggcaatcctgatggtcattgtcccaacgcttactattggttatatt < 1:3752490‑M2/1‑1 (MQ=255) tggcaatcctgatggtcattgtcccaacgcttactattggttatatTTca > 1:3489815‑M2/47‑50 (MQ=255) tggcaatcctgatggtcattgtcccaacgcttactattggttatatTTca > 1:611364‑M2/47‑50 (MQ=255) gcaatcctgatggtcattgtcccaacgcttactattggttatatTTcac < 1:1977404‑M2/5‑1 (MQ=255) gcaatcctgatggtcattgtcccaacgcttactattggttatatTTcac < 1:1028858‑M2/5‑1 (MQ=255) aatcctgatggtcattgtcccaacgcttactattggttatatTTcaccac > 1:1474662‑M2/43‑50 (MQ=255) aatcctgatggtcattgtcccaacgcttactattggttatatTTcaccac > 1:2912697‑M2/43‑50 (MQ=255) atcctgatggtcattgtcccaacgcttactattggttatatTTCACCACt < 1:412991‑M2/9‑1 (MQ=255) ctgatggtcattgtcccaacgcttactattggttatatTTCACCACTCAt > 1:2197278‑M2/39‑50 (MQ=255) ctgatggtcattgtcccaacgcttactattggttatatTTCACCACTCAt > 1:2141730‑M2/39‑50 (MQ=255) tgatggtcattgtcccaacgcttactattggttatatTTCACCACTCAtt > 1:2534743‑M2/38‑50 (MQ=255) atggtcattgtcccaacgcttactattggttatatTTCACCACTCAtt < 1:1319771‑M2/13‑1 (MQ=255) atggtcattgtcccaacgcttactattggttatatTTCACCACTCATTGc > 1:1813642‑M2/36‑50 (MQ=255) tcattgtcccaacgcttactattggttatatTTCACCACTCATTGCcaca > 1:1586470‑M2/32‑50 (MQ=255) ttgtcccaacgcttactattggttatatTTCACCACTCATTGCCACATTc < 1:1200983‑M2/22‑1 (MQ=255) gtcccaacgcttactattggttatatTTCACCACTCATTGCCACATTcc < 1:363672‑M2/23‑1 (MQ=255) gtcccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCt > 1:2639375‑M2/27‑50 (MQ=255) tcccaacgcttaccattggttatatTTCACCACTCATTGCCACATTCCt < 1:2117678‑M2/24‑1 (MQ=255) ccaacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtgt < 1:2747992‑M2/27‑1 (MQ=255) caacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtgtg > 1:2066928‑M2/23‑50 (MQ=255) caacgcttactattggttatatTTCACCACTCATTGCCACATTCCTtgtg > 1:1207553‑M2/23‑50 (MQ=255) acgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta < 1:1570638‑M2/30‑1 (MQ=255) acgcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGta > 1:1717121‑M2/21‑50 (MQ=255) gcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGtata < 1:2679823‑M2/32‑1 (MQ=255) gcttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGtata < 1:3439132‑M2/32‑1 (MQ=255) cttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATag < 1:1774590‑M2/33‑1 (MQ=255) cttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATag < 1:296405‑M2/33‑1 (MQ=255) cttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATag > 1:1270014‑M2/18‑50 (MQ=255) ttactattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc > 1:3003751‑M2/17‑50 (MQ=255) actattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagc < 1:2861732‑M2/34‑1 (MQ=255) tattggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccagc > 1:3541224‑M2/13‑50 (MQ=255) ttggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccagcc < 1:3927243‑M2/39‑1 (MQ=255) ttggttatatTTCACCACTCATTGCCACATTCCTTGTGTATagccagc < 1:778488‑M2/38‑1 (MQ=255) ttggttatatTTCACCACTCATTGCCACATTCCTTGTGTATAgccagcca < 1:2162467‑M2/40‑1 (MQ=255) ttggttatatTTCACCACTCATTGCCACATTCCTTGTGTATAgccagcca < 1:2326735‑M2/40‑1 (MQ=255) ggttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAtt > 1:760967‑M2/9‑50 (MQ=255) gttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttt > 1:3618934‑M2/8‑50 (MQ=255) gttatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttt > 1:3181257‑M2/8‑50 (MQ=255) tatatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttttt > 1:1856184‑M2/6‑50 (MQ=255) atatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAttttt < 1:1085855‑M2/45‑1 (MQ=255) tatTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTa > 1:614713‑M2/4‑50 (MQ=255) atTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAc > 1:2988457‑M2/3‑50 (MQ=255) atTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAc > 1:1269824‑M2/3‑50 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAc < 1:343571‑M2/48‑1 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAc < 1:3934612‑M2/48‑1 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAc < 1:651205‑M2/48‑1 (MQ=255) tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACg < 1:729787‑M2/49‑1 (MQ=255) ttCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACgg > 1:3662171/1‑50 (MQ=255) | TGCGCCAAAACCTACAAGACCATAGAACCGCCAGCCTTTCGCCTTTTTTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTACGG > NC_000913/2336585‑2336682 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |