| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 332,366 | Δ44,951 bp | pdeL–yaiL | 39 genes pdeL, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, mhpD, mhpF, mhpE, mhpT, yaiL |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 332366 | 377316 | 44951 | 64 [0] | [0] 66 | pdeL–yaiL | pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 332365 | 0 (0.000) | 64 (1.100) | 47/98 | 0.0 | 100% | intergenic (+489/‑6) | yahV/pdeL | protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| ? | NC_000913 | 377317 = | NA (NA) | intergenic (+6/+218) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
GAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/332317‑332365‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAG > NC_000913/377317‑377365 GAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGG < 1:226757/50‑1 AATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGA < 1:3789695/50‑1 AATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGA > 1:1294081/1‑50 AATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGA > 1:2796306/1‑50 AATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGA < 1:4106142/50‑1 AATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGA < 1:4126281/50‑1 ATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGAT < 1:951500/50‑1 ATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGAT < 1:750223/50‑1 ATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGAT < 1:3955079/50‑1 TCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATA < 1:1602042/50‑1 CGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGAT > 1:1793276/1‑48 CGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGAT > 1:644/1‑48 GACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAG < 1:1616100/50‑1 GACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAA < 1:3763554/49‑1 GACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAA < 1:3947057/49‑1 GACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAA < 1:2275679/49‑1 GACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAA < 1:993558/49‑1 ACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGT > 1:242806/1‑50 ACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGT < 1:3953728/50‑1 AGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCG > 1:2611721/1‑50 GTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTG < 1:4407531/50‑1 GTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTG > 1:2872882/1‑50 TAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGC > 1:2888260/1‑50 TAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGC < 1:378711/50‑1 AATCACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG > 1:3162849/1‑50 CACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG > 1:2243253/1‑47 ACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG > 1:2786710/1‑46 ACTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG > 1:147738/1‑46 CTCATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGAT < 1:4126262/50‑1 ATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCC > 1:3926269/1‑50 ATACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGC < 1:1647885/49‑1 TACTGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCT < 1:3131865/50‑1 TGAACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGAT > 1:679111/1‑50 AACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGC > 1:3201491/1‑50 AACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGAT < 1:3752726/48‑1 AACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGAT < 1:2231746/48‑1 AACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGAT < 1:2872363/48‑1 ACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCG < 1:1224673/50‑1 ACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGC > 1:878149/1‑49 AGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGAC < 1:3357840/50‑1 AGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGAC < 1:1082642/50‑1 GCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACG < 1:4449141/50‑1 GCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACG < 1:2792418/50‑1 ATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTA > 1:2524800/1‑50 AAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATG > 1:139269/1‑50 AAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGC < 1:4448292/50‑1 AGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGC < 1:4309879/50‑1 GATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCG > 1:3900737/1‑50 GATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCG < 1:2626931/50‑1 ATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGT > 1:3623852/1‑50 ATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGT < 1:310340/50‑1 TAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTC > 1:3937885/1‑50 TAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTC < 1:801812/50‑1 AAAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCT > 1:2874890/1‑50 AAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTT < 1:4190467/50‑1 AAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTT < 1:2774190/50‑1 AAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCT > 1:1631131/1‑49 GTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATC < 1:4101920/50‑1 GTGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAT > 1:3806044/1‑49 TGGCTAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAT > 1:84298/1‑48 TGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCA < 1:2555768/50‑1 TGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCA < 1:2325968/50‑1 TGGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAT > 1:3383489/1‑48 GGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAG > 1:1556674/1‑50 GAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/332317‑332365‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAG > NC_000913/377317‑377365 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |