| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 332,366 | Δ44,951 bp | pdeL–yaiL | 39 genes pdeL, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, mhpD, mhpF, mhpE, mhpT, yaiL |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 332366 | 377316 | 44951 | 64 [0] | [0] 66 | pdeL–yaiL | pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 332365 | 0 (0.000) | 64 (1.100) | 47/98 | 0.0 | 100% | intergenic (+489/‑6) | yahV/pdeL | protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| ? | NC_000913 | 377317 = | NA (NA) | intergenic (+6/+218) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
GAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCGGTAC > NC_000913/332317‑332414 | gAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGg < 1:226757‑M1/50‑2 (MQ=255) aaTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGga < 1:3789695‑M1/50‑3 (MQ=255) aaTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGga > 1:1294081‑M1/1‑48 (MQ=255) aaTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGga > 1:2796306‑M1/1‑48 (MQ=255) aaTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGga < 1:4106142‑M1/50‑3 (MQ=255) aaTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGga < 1:4126281‑M1/50‑3 (MQ=255) aTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgat < 1:951500‑M1/50‑4 (MQ=255) aTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgat < 1:750223‑M1/50‑4 (MQ=255) aTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgat < 1:3955079‑M1/50‑4 (MQ=255) tCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgata < 1:1602042‑M1/50‑5 (MQ=255) cGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgat > 1:1793276‑M1/1‑45 (MQ=255) cGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgat > 1:644‑M1/1‑45 (MQ=255) gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataag < 1:1616100‑M1/50‑7 (MQ=255) gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataa < 1:3763554‑M1/49‑6 (MQ=255) gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataa < 1:3947057‑M1/49‑6 (MQ=255) gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataa < 1:2275679‑M1/49‑6 (MQ=255) gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataa < 1:993558‑M1/49‑6 (MQ=255) aCAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagt > 1:242806‑M1/1‑43 (MQ=255) aCAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagt < 1:3953728‑M1/50‑8 (MQ=255) aGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcg > 1:2611721‑M1/1‑41 (MQ=255) gTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtg < 1:4407531‑M1/50‑12 (MQ=255) gTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtg > 1:2872882‑M1/1‑39 (MQ=255) tAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgc > 1:2888260‑M1/1‑38 (MQ=255) tAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgc < 1:378711‑M1/50‑13 (MQ=255) aaTCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg > 1:3162849‑M1/1‑37 (MQ=255) cACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg > 1:2243253‑M1/1‑34 (MQ=255) aCTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg > 1:2786710‑M1/1‑33 (MQ=255) aCTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg > 1:147738‑M1/1‑33 (MQ=255) cTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagat < 1:4126262‑M1/50‑19 (MQ=255) aTACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcc > 1:3926269‑M1/1‑29 (MQ=255) aTACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgc < 1:1647885‑M1/49‑21 (MQ=255) tACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcct < 1:3131865‑M1/50‑23 (MQ=255) tGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat > 1:679111‑M1/1‑25 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgc > 1:3201491‑M1/1‑23 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat < 1:3752726‑M1/48‑26 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat < 1:2231746‑M1/48‑26 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat < 1:2872363‑M1/48‑26 (MQ=255) aCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcg < 1:1224673‑M1/50‑29 (MQ=255) aCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgc > 1:878149‑M1/1‑22 (MQ=255) aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac < 1:3357840‑M1/50‑31 (MQ=255) aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac < 1:1082642‑M1/50‑31 (MQ=255) gCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacg < 1:4449141‑M1/50‑32 (MQ=255) gCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacg < 1:2792418‑M1/50‑32 (MQ=255) aTAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgcta > 1:2524800‑M1/1‑16 (MQ=255) aaaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatg > 1:139269‑M1/1‑14 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc < 1:4448292‑M1/50‑38 (MQ=255) aGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgc < 1:4309879‑M1/50‑40 (MQ=255) gATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcg > 1:3900737‑M1/1‑10 (MQ=255) gATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcg < 1:2626931‑M1/50‑41 (MQ=255) aTAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgt > 1:3623852‑M1/1‑9 (MQ=255) aTAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgt < 1:310340‑M1/50‑42 (MQ=255) tAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtc > 1:3937885‑M1/1‑8 (MQ=255) tAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtc < 1:801812‑M1/50‑43 (MQ=255) aaaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct > 1:2874890‑M1/1‑7 (MQ=255) aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctt < 1:4190467‑M1/50‑45 (MQ=255) aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctt < 1:2774190‑M1/50‑45 (MQ=255) aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct > 1:1631131‑M1/1‑6 (MQ=255) gTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatc < 1:4101920‑M1/50‑48 (MQ=255) gTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat > 1:3806044‑M1/1‑3 (MQ=255) tGgctaagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat > 1:84298‑M1/1‑2 (MQ=255) tGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatca < 1:2555768‑M1/50‑49 (MQ=255) tGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatca < 1:2325968‑M1/50‑49 (MQ=255) tGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat > 1:3383489‑M1/1‑2 (MQ=255) ggataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatcag > 1:1556674‑M1/1‑1 (MQ=255) | GAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCGGTAC > NC_000913/332317‑332414 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |